BS22389.complete Sequence
1625 bp assembled on 2011-02-17
GenBank Submission: KX805796
> BS22389.complete
GAAGTTATCAGTCGACATGGTCACCTGCGGCCGGCAAACGTTCAACATGC
TGCCCATGGCGCCGACGAGTCCTTTTGTGAGCAGCAGCTCCTCGGTGGCC
GCATCCTCGACTTCCGTTTCCGCCAGCAGTACCGTTTCCGCCTCCGCGAG
CAGCAAGCCCAAGCTGGCCTTCAGCATCGACTCGATTGTGGGCGAATCCT
CGACGAGATCGGCTCCACTAAGGGTCAGTGTGATATCTTCGCCGCCGCCG
CGCAGCGAAAGTCCCGCTTCGCCAACGAACACGAACAACAGTGGGCGCCG
GACGCCCAGGGGCTATATCTACTGCCGCAGAAGGGATTCGCTGGATCGAT
CGCGCAGTCCTCAGAGATCACCGGTTAGCCGGTCGCCATCGCCCCCCAAT
GCAGGAGGCAATCCGGCAGCGGCCGGGAATACTGCAAAGTCCGGGGATCC
ATCGTCGGGAACGGGAAATCCTCCAACCCTCATCCGTCCGTTGCCTCTGC
CGGCGCCAAATCTAGCTTTAATTGGGAACCGCACCTCACCGAACGCCATG
GCGGTGCGCATGGCGGGTCCGCCCCACCCGCCGTCGCAGCCACCGCCGTT
CCTTGCCGCCCAGTTCCAAATGGCTGCTGCACTGGCTCATCATCACCAGC
AGCAACAGCAGCAGCAACAACAGCAACTTCCGCCCGTGCCAACTGGACCG
CCACATGGTCCACATCCGCATCTGCCGCCCGGCCAAATTCCACTTGGAAT
CTTTCCCGGCGGACCGCATCCCGGGCATCCTCCGCCCCACGGACACCATC
CGTTCGGGAGTGCGCCGCATCTGATCCGGGATAGCTATCCGTTGTATCCA
TGGTTGCTCAGCCGACACGGACGCATTTTTCCACGATTCCCAGGCAATTT
CCTGTTCCAGCCATTCCGCAAGCCAAAGCGGGTGCGCACCGCCTTCTCGC
CGACGCAGCTACTCAAGCTGGAGCACGCCTTCGAGGGGAACCACTACGTG
GTGGGGGCGGAGCGGAAGCAGTTGGCCCAGGGACTCAGCCTGACCGAAAC
GCAGGTTAAGGTTTGGTTCCAGAACCGACGCACCAAGCACAAGCGAATGC
AGCAGGAGGGCGGCGATGGCAGCGACACCAAGAGCAACAAGGGCAGCTCC
TCCGGCGGCGGAGGCGGCGGCGATGGGGAGGACGATGCCAAGCACGATGG
GTCGCAGCACAGCTACGAGGATGCAGAGGATCCGGAGGACGAGGACGAGA
TCGAGGAGGACGACGAGGACGAGGTGATCGACATGGACGACTACGGCAGT
GAAATGGATGCGGAGGAGCACCAACGGCTGCGGGAGCAGTTCCAGCAGCA
GTTGGCCCAGCACCAGCAGCAGTTCATGCAGCAGAATGCCGGTGAGGCGG
CCACCCTCAGTCCGCAGCAGCAGCACCAGTTGCTGCAGCAGCACCAGCAG
CATCTGCAGCAGCAGCACCACCAGCAGCAGCAGCACTTCATTCAGCAGCA
GCAGCAGCTTTATCTGCGGGAAAGAGAGAGGGAGAGGGAGAGGGAAAGGG
AGAGGGAGCGGGAAAAGTCGCGGGAGCGGGAAAATCAGTAAAAGCTTTCT
AGACCATTCGTTTGGCGCTTAAAGG
BS22389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E5-RA | 1575 | CG9930-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
| ems-RA | 1485 | CG2988-PA | 1064..1348 | 828..1109 | 580 | 81.1 | Plus |
| slou-RB | 2097 | CG6534-PB | 1747..1797 | 1037..1087 | 180 | 90.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E5-RA | 2122 | CG9930-RA | 395..1969 | 17..1591 | 7875 | 100 | Plus |
| ems-RA | 2478 | CG2988-RA | 1390..1674 | 828..1109 | 580 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13873300..13874179 | 896..17 | 4400 | 100 | Minus |
| 3R | 32079331 | 3R | 13867498..13868036 | 1591..1053 | 2695 | 100 | Minus |
| 3R | 32079331 | 3R | 13868597..13868756 | 1056..897 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 13903605..13903816 | 898..1109 | 505 | 82.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:02:26 has no hits.
BS22389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 16:37:44 Download gff for
BS22389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E5-RA | 395..1971 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:32 Download gff for
BS22389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E5-RA | 395..1971 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:47 Download gff for
BS22389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E5-RA | 395..1971 | 17..1596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:47 Download gff for
BS22389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13867496..13868034 | 1055..1596 | 99 | <- | Minus |
| 3R | 13868599..13868756 | 897..1054 | 100 | <- | Minus |
| 3R | 13873300..13874179 | 17..896 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:32 Download gff for
BS22389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9693218..9693756 | 1055..1596 | 99 | <- | Minus |
| arm_3R | 9694321..9694478 | 897..1054 | 100 | <- | Minus |
| arm_3R | 9699022..9699901 | 17..896 | 100 | | Minus |
BS22389.pep Sequence
Translation from 16 to 1590
> BS22389.pep
MVTCGRQTFNMLPMAPTSPFVSSSSSVAASSTSVSASSTVSASASSKPKL
AFSIDSIVGESSTRSAPLRVSVISSPPPRSESPASPTNTNNSGRRTPRGY
IYCRRRDSLDRSRSPQRSPVSRSPSPPNAGGNPAAAGNTAKSGDPSSGTG
NPPTLIRPLPLPAPNLALIGNRTSPNAMAVRMAGPPHPPSQPPPFLAAQF
QMAAALAHHHQQQQQQQQQQLPPVPTGPPHGPHPHLPPGQIPLGIFPGGP
HPGHPPPHGHHPFGSAPHLIRDSYPLYPWLLSRHGRIFPRFPGNFLFQPF
RKPKRVRTAFSPTQLLKLEHAFEGNHYVVGAERKQLAQGLSLTETQVKVW
FQNRRTKHKRMQQEGGDGSDTKSNKGSSSGGGGGGDGEDDAKHDGSQHSY
EDAEDPEDEDEIEEDDEDEVIDMDDYGSEMDAEEHQRLREQFQQQLAQHQ
QQFMQQNAGEAATLSPQQQHQLLQQHQQHLQQQHHQQQQHFIQQQQQLYL
REREREREREREREREKSRERENQ*
BS22389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E5-PA | 524 | CG9930-PA | 1..524 | 1..524 | 2797 | 100 | Plus |
| ems-PA | 494 | CG2988-PA | 151..487 | 28..410 | 524 | 39.2 | Plus |
| Antp-PF | 365 | CG1028-PF | 211..356 | 208..386 | 212 | 32.4 | Plus |
| Antp-PE | 365 | CG1028-PE | 211..356 | 208..386 | 212 | 32.4 | Plus |
| Antp-PJ | 378 | CG1028-PJ | 224..369 | 208..386 | 212 | 32.4 | Plus |
