BS22395.complete Sequence
2207 bp assembled on 2011-02-16
GenBank Submission: KX806263
> BS22395.complete
GAAGTTATCAGTCGACATGCATGCAGAACTCAGCGAAATGGAGTTGCGCA
TAGTGGCGCGACTAAACGAGGAGATCGGAAAGGATGCCAGCCAGCTACAC
CGGGCCAGCCACCTCGTTAGCCACTACAAAAAGCACCTCCAAGTTTTGTC
CCAAACGCTCGACTACGAGGATCCCCAGAACGTGTCCTGCTACAAAACCG
CCTTCCAATGCCAGCAACAGGTTTGCGAGAGCATCGACTTCGAGCTGGAA
AAGCTGGCTCACTTCGAGGACAAGCTGAAAAGAAAGCTAAAGGAGTGCCA
GCCCGTGCTTGAGGGAGTGGCAGAGGATTTAGACAAGGTGCGACAACTGC
AGCGTTTGCAACAGTATCTGCTCCTGGTGCAGGACATTCAGGAGATAAGC
GCTGCCCTAGGCAATGCCATCAATGGCAAGGACGAGGACAAACTGGTTAA
TATCTACCTAACCCTCTACGAGGGCAACGACTGCGAGCACAGCGTAGTGG
GTCGCCTGCATGCTGTGCAGGCACAGTCGCTGAAATCCTTTGCCGAACGC
ACTGCCATCTACTGGCACAAGCTGCTCCTCAAGCGCCTGTCCAGCGCATT
CGAGGCTGTACTGAAGAGCATGCGCTGGGCGCATCTAGAACAGCAGGCCC
TTAACTATTCGTCCGCACGAGACACTGCCAAGGCGCAACTGCTAGCGGAG
TACATGTTCCTCATCAAATCTCCAGCCGAAGAGCGGGCGCCACTGCAAAG
CATCACGCCCAGCATCGTGTGCCAGCCCATCAACCGGGTGGTGCAGCTCC
TATTGGCGCCGTATCGCCAGCGTTTCCAATTTCACTTCACAGGCACCAGA
CAAACCAATAGATTAGACAAGCCCGAGTGGTTCTATACGCAAATTCTCAA
CTGGGGCAAGGAGACGCATTTCTTTGTAGGCAAAACATTTCAGCCAGCTG
CCATTAAAGCGGGTAAGCTGGACTACAATCTCAGGCTGGAGTTTATTCGA
GGACTGGTGCAGTTAGCCATTGAAAAGTTGGCGGTGGACATAGAACAGAT
TGCCCAGGACCAGATACTATTTGCCCATCTACTTGATGAGACGCTGGCCT
TCGAATCCGAGTTACGGGAAACATTTGGGTATCCGGCTAGTTTTCCCAGC
GCGATTTCTGTAATCACACAACCCATGTATTTGCTACGCTGGATTTCACT
GGAAGAACGATTTTGTGCGGAAAAAATGGATGACATTCTGCAGGCGGAGA
CGCCATTCCAGCTAATCGATCCCAACTCATTCGAGAACGATCTGAAAATA
CCCAAGTGTGCGGATCAGTTTATGCGACTGCTGGACGCCATTAAGGATCG
TTACTATGGTCTGATTCAACCGGGCCACCAGCTGCAGTTCCTGCACCTGC
AACTGGAGCTGATCGATAGCTTCCGACAACGCCTGGTGCAACTGCACAGC
AGTGGAGCGGTGCCAAGCATTCCCATACTGAATGCCATCAACTATTTGGT
AATGGTGCTCCGTGAATGGGGCGAAAACGTGCATTATCTGCACCTGCATG
CGGCACTTGCCGGTCCAAATGCCACGGAGATTAATTCAGTGTTCGAGCAT
GCCGTCGCTGAGTTGGAACACTGGGCCAGACAACTAATGCGGAATCTGGC
CACCAAGGCAACCAATGAAATGAAGGCGAAATCGATGAGCTATCGCCGTG
ACGCGTGGCCGACTATGCCCGAACAAAACAGCCGGGAGCCGTTCATCCTT
TCGCCCAGTGGTGGCGAAATGTTCCAGGTGCTGGTCACCCTGCTACACAA
TCTGGAACGGGAACTCTCCGCCAATCTGTTCACCCAAACGCTCCGTTTGA
TAGCCCATCAAATCGATGACTTCATGCTCGAGAGCATGGTCATGAACACG
AAGTTCTCAGCTGCGGGAGCAGCGCAATTCAATTATGACATGACACGCAA
TTTATTCGCGCTCTTTGGACAGTATACACGTCGTCCCGAGCTGCTCTTCA
AGCGAACACACGATGCCTGCAAGCTGCTGGCGGCGGCACGAGGAACAGCT
TTGTTGCTGCTGGAAACGCTGCGTGGTAATCAATCGGTGGAGGAGAAGAC
GAAGCCGCTGAGGGAACTGCATGTGCTCAGCATGGACAGCAAACAGTGCA
TTGAGGTTCTGGAGCGGAGGATGGACATAAAGATGTTTTAGAAGCTTTCT
AGACCAT
BS22395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rint1-RA | 2175 | CG8605-PA | 1..2175 | 17..2191 | 10875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rint1-RA | 2394 | CG8605-RA | 106..2284 | 13..2191 | 10880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7323923..7324751 | 157..985 | 4145 | 100 | Plus |
| 3L | 28110227 | 3L | 7325090..7325882 | 1212..2004 | 3965 | 100 | Plus |
| 2R | 25286936 | 2R | 1806868..1807354 | 759..271 | 2185 | 96.9 | Minus |
| 3L | 28110227 | 3L | 7324809..7325035 | 985..1211 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 7325958..7326145 | 2004..2191 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 7323724..7323868 | 13..157 | 710 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:04:03 has no hits.
BS22395.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:17:54 Download gff for
BS22395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8605-RA | 100..2274 | 17..2191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:02 Download gff for
BS22395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8605-RA | 110..2284 | 17..2191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:07 Download gff for
BS22395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rint1-RA | 110..2284 | 17..2191 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:07 Download gff for
BS22395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7325959..7326145 | 2005..2191 | 100 | | Plus |
| 3L | 7325090..7325882 | 1212..2004 | 100 | -> | Plus |
| 3L | 7323728..7323868 | 17..157 | 100 | -> | Plus |
| 3L | 7323924..7324751 | 158..985 | 100 | -> | Plus |
| 3L | 7324810..7325035 | 986..1211 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:02 Download gff for
BS22395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7318190..7318982 | 1212..2004 | 100 | -> | Plus |
| arm_3L | 7319059..7319245 | 2005..2191 | 100 | | Plus |
| arm_3L | 7316828..7316968 | 17..157 | 100 | -> | Plus |
| arm_3L | 7317024..7317851 | 158..985 | 100 | -> | Plus |
| arm_3L | 7317910..7318135 | 986..1211 | 100 | -> | Plus |
BS22395.pep Sequence
Translation from 16 to 2190
> BS22395.pep
MHAELSEMELRIVARLNEEIGKDASQLHRASHLVSHYKKHLQVLSQTLDY
EDPQNVSCYKTAFQCQQQVCESIDFELEKLAHFEDKLKRKLKECQPVLEG
VAEDLDKVRQLQRLQQYLLLVQDIQEISAALGNAINGKDEDKLVNIYLTL
YEGNDCEHSVVGRLHAVQAQSLKSFAERTAIYWHKLLLKRLSSAFEAVLK
SMRWAHLEQQALNYSSARDTAKAQLLAEYMFLIKSPAEERAPLQSITPSI
VCQPINRVVQLLLAPYRQRFQFHFTGTRQTNRLDKPEWFYTQILNWGKET
HFFVGKTFQPAAIKAGKLDYNLRLEFIRGLVQLAIEKLAVDIEQIAQDQI
LFAHLLDETLAFESELRETFGYPASFPSAISVITQPMYLLRWISLEERFC
AEKMDDILQAETPFQLIDPNSFENDLKIPKCADQFMRLLDAIKDRYYGLI
QPGHQLQFLHLQLELIDSFRQRLVQLHSSGAVPSIPILNAINYLVMVLRE
WGENVHYLHLHAALAGPNATEINSVFEHAVAELEHWARQLMRNLATKATN
EMKAKSMSYRRDAWPTMPEQNSREPFILSPSGGEMFQVLVTLLHNLEREL
SANLFTQTLRLIAHQIDDFMLESMVMNTKFSAAGAAQFNYDMTRNLFALF
GQYTRRPELLFKRTHDACKLLAAARGTALLLLETLRGNQSVEEKTKPLRE
LHVLSMDSKQCIEVLERRMDIKMF*
BS22395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rint1-PA | 724 | CG8605-PA | 1..724 | 1..724 | 3714 | 100 | Plus |
