BS22425.complete Sequence
1520 bp assembled on 2011-01-27
GenBank Submission: KX801366
> BS22425.complete
GAAGTTATCAGTCGACATGTCCGAAGTATTGCAGCGCTTGGCTTCCACTG
AAGTTAGAAAGGCAAGAGATCCAATAGATCGGTTCCTGGAGCGACGTCAA
CTCTTTCGGAAGCATATGCTAGGGGATGCCTCGAGTCTGTTTCGAGTGGT
CGCTGAGCAGGTGTACGACACCCAGATGCTTCATTACGAAGTGAGGATGG
AGTGCGTTCGCTATATGTTCACGAAATGGAAGACCTTCCGGCGATTTGTG
AGTGGAGACTTCGACGAGTACTTGTGGCATTTGGGCAAGACCAAGACGGC
GGGCACCATACTGGAACTGGGTGCCATGTGCCACCTGTACCGCCGCAATG
TCATCATCTACGAACCCTTCGATATGGGCCGGATGGTCACCTACAACAAG
GACTACAAGGAGATCCTACGTATCTTTATGAACAGCATGGGGCATTTTGA
AACCGTGCTGACTATGCAGGACGTCGATATGGCCGCCGTTTGCCAGTCTG
TGTCCTTCAAGATGCTTTACAAGCACCTGTTCCGCCTGCCAGATGTTGAT
CTCGCTGTGGAATGGATGCTGTATCCAGATACCTTCAAAATGGGCACTGA
ATATGAGTTCGACTCGCGCGGCCGCGCCATCCGTTTGCTGTGCCGCAACG
GACGAAGCTTCAAGCTGGATCGCCCTGAGAGCACCATTTGCTTGCTTGAA
AACTCCCAGATGTGCCCGTTTCATAATCGCAGGCTAGCAATGGGCGGACA
GTTTGCCGACTTTTCCTGCATGCGGATCCTTCTGGAGGAGAACAACATTC
CCTTCTCCTATTTGGTAGCCAAGTCAATGGATCCCTGTAGGTATCGTAAC
GTGGAGCTGACTAGCGCGATTGAAGCTCGTCGTGAAGCGTATGAATTTGG
TATTTACATAGGCGACTATAACTTCAAGGTGGGAGCTAAGTGCCAGGTGC
AGTTGGATACCAATAGACGCGATCTGCTCAGCGCTTGTTACATCCAATCG
ATCGATAAGAAGAAGTCCGTTTGTAAAGTGTTTATCGAGGAGCAGGGAAA
ACTGGTTGATGTGCCCTCCGATAATCTACATCCACTGCCACCAGATGAAT
TCAAGGCCTGGGACTTTGCTCGCAAGCGGCCCCAACGTCTCCACAATAGC
CAAATGGGGAGACAGTCGGTACAAGGTGATCAGCAAGGATTCGTCCCTGA
CCCGATGCCTGGTACGGCTCCCTCGATGCCACCACCACCGGTGGCCGATC
CTCGTCCGGTTAACGTAACAGCACAGCAGCCACCTGTTTTCGGGCCCTCT
AGATGGATGGAACCCACCCGGCCGTTGATGCCTAATCCTTTGATGATACA
TCAGACAGGATCGTTCGTTTTCGTCCAACAACCACGAGTTGGTCCGCCGT
CGGTCATGATGCACGTTTTGATAATTGTACACAACGCACCATACATGCTT
GCGTTTGATCATGCCCCCCACCCGCCTGCACCCCAGTGCACTGCCCCATT
TTAAAAGCTTTCTAGACCAT
BS22425.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3251-RA | 1488 | CG3251-PA | 1..1488 | 17..1504 | 7440 | 100 | Plus |
| otu-RE | 2436 | CG12743-PE | 107..196 | 123..212 | 195 | 81.1 | Plus |
| otu-RD | 2436 | CG12743-PD | 107..196 | 123..212 | 195 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3251-RA | 1685 | CG3251-RA | 103..1590 | 17..1504 | 7440 | 100 | Plus |
| otu-RE | 3118 | CG12743-RE | 293..382 | 123..212 | 195 | 81.1 | Plus |
| otu-RD | 3006 | CG12743-RD | 181..270 | 123..212 | 195 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4689060..4690504 | 1504..60 | 7225 | 100 | Minus |
| 2L | 23513712 | 2L | 4690558..4690600 | 59..17 | 215 | 100 | Minus |
| X | 23542271 | X | 8488636..8488725 | 212..123 | 195 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:52:47 has no hits.
BS22425.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:11 Download gff for
BS22425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3251-RA | 103..1588 | 17..1502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:44 Download gff for
BS22425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3251-RA | 103..1588 | 17..1502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:43 Download gff for
BS22425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3251-RA | 103..1588 | 17..1502 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:43 Download gff for
BS22425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4690558..4690600 | 17..59 | 100 | | Minus |
| 2L | 4689062..4690504 | 60..1502 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:44 Download gff for
BS22425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4689062..4690504 | 60..1502 | 100 | <- | Minus |
| arm_2L | 4690558..4690600 | 17..59 | 100 | | Minus |
BS22425.pep Sequence
Translation from 16 to 1503
> BS22425.pep
MSEVLQRLASTEVRKARDPIDRFLERRQLFRKHMLGDASSLFRVVAEQVY
DTQMLHYEVRMECVRYMFTKWKTFRRFVSGDFDEYLWHLGKTKTAGTILE
LGAMCHLYRRNVIIYEPFDMGRMVTYNKDYKEILRIFMNSMGHFETVLTM
QDVDMAAVCQSVSFKMLYKHLFRLPDVDLAVEWMLYPDTFKMGTEYEFDS
RGRAIRLLCRNGRSFKLDRPESTICLLENSQMCPFHNRRLAMGGQFADFS
CMRILLEENNIPFSYLVAKSMDPCRYRNVELTSAIEARREAYEFGIYIGD
YNFKVGAKCQVQLDTNRRDLLSACYIQSIDKKKSVCKVFIEEQGKLVDVP
SDNLHPLPPDEFKAWDFARKRPQRLHNSQMGRQSVQGDQQGFVPDPMPGT
APSMPPPPVADPRPVNVTAQQPPVFGPSRWMEPTRPLMPNPLMIHQTGSF
VFVQQPRVGPPSVMMHVLIIVHNAPYMLAFDHAPHPPAPQCTAPF*
BS22425.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3251-PA | 495 | CG3251-PA | 1..495 | 1..495 | 2658 | 100 | Plus |
| otu-PC | 853 | CG12743-PC | 1..409 | 1..382 | 921 | 45.7 | Plus |
| otu-PB | 853 | CG12743-PB | 1..409 | 1..382 | 921 | 45.7 | Plus |
| otu-PE | 811 | CG12743-PE | 1..367 | 1..382 | 778 | 41.3 | Plus |
| otu-PD | 811 | CG12743-PD | 1..367 | 1..382 | 778 | 41.3 | Plus |
