BS22426.complete Sequence
2927 bp assembled on 2011-02-21
GenBank Submission: KX805542
> BS22426.complete
GAAGTTATCAGTCGACATGCTGCCCTACAATGTGCGAAACGCCGGTGGCG
GAAGCGTTGGCGGAATCCTGCGGCGCACGGGCCAAGGTTCGGGCACCGGA
AGCACGATTCTTGGCAATGGAAACAGTCCGGGAGCACTAGGAGCCGGAAA
AGTGTCCTCCTCCAGTCTGGAAAACCACAGACAACCGCCGTTGGAACTCC
TCGTGTTTGGCTACGCCTGCAAGATTTTCCGCGATGACGAGAAGGCGCGG
GAAATGGACCACGGCAAGCAGTTGATTCCCTGGATGGGCGATGTAAATCT
CAAGATTGACAGATACGATGTGCGTGGAGCCCTCTGCGAACTGGCACCGC
ACGAGGCGCCACCAGGCGGATACGGTAACCGGCTGGAGTACTTGAGTGCC
GAGGAGCAGCGCGCCGAGCAGCTGTGCGAGGAGGAGCGGTACCTGTTTCT
GTACAATAACGAGGAGGAGCTGCGACTGCGACAAGAGGAGGACCTCAAGC
GACTGCAGCAGGAAACCTCGGGCGGCTGCTTCAGCCAGGTGGGCTTTCAG
TACGATGGCCAGTCGGCAGCCTCCACTTCCATCGGTGGCTCCTCAACGGC
GACCTCCCAGCTCTCGCCGAACTCCGAGGAGAGCGAGCTGCCTTTCGTCC
TTCCCTACACCCTGATGATGGCACCACCCTTGGACATGCAGCTGCCCGAA
ACGATGAAGCAGCACGCTATCATAGAGAAGACTGCTCGCTTTATCGCAAC
CCAGGGCGCCCAAATGGAAATTCTTATCAAGGCAAAGCAGGCGAACAACA
CGCAGTTCGATTTCCTGACCCAAGGTGGACATCTGCAGCCTTACTACCGT
CACCTTTTGGCTGCTATCAAGGCGGCCAAGTTCCCGCCCGCACCACAAAC
TCCGTTGGATCAGCAGAATACAGACAAGGAAGCACCCTCAGCGGACGACC
ACAGCGAGGAAGTCGCGGGTGGAAGGAGGAACCCCAACCAAGTGGTCATC
ACGGTGCCCACCATCAAGTACAAGCCCTCGGCCAACTGCGCCTACACCCA
GCTAATTAGCAAGATCAAGGGCGTGCCCCTCCAAGCGGTCTTGCAGGAGG
ACGAGTCAAGCAATCCGGGCAACTCGCAGCACTCGGGCGGCACGGCCTCG
CCCGCACTTAGCTGTCGATCCGAAGGTCACAACAGCCAGGGAGGTGAGTT
CACACCCGTATTGCTGCAGTACAACGGGAGCACCTTCACACACGAGGAGG
AATCGTCGAACCGGGAGCAGCAGGATGATAACGATGTCAACGGTGGCGAG
CCGCCCCAGGTGGAGCTGCTTAAGAACACGAGTGCGCTGGCGTTGGCCCA
AAACTATAGTTCAGAAAGTGAGGAGGAGGAAGATCAAGTTCAGCCAGAAA
AGGAAGAGGAAAAGAAACCAGAGCCCGTGCTTACCTTCCCCGTTCCGAAG
GACAGTCTAAGGCACATAATCGACAAGACGGCCACGTACGTAATCAAGAA
CGGACGCCAATTCGAGGAGACCCTTCGCACGAAGAGCGTGGATCGGTTTA
GTTTCTTGCTGCCGGCCAATGAGTACTATCCATACTACTTGTACAAAGTG
ACCGGCGATGTGGATGCGGCTTCCAAGGAGGAGAAAACTAGGAAAGCAGC
AGCCGTAGCTGCCGCCCTGATGTCAAAGAAGGGTCTTAGTTTTGGAGGAG
CAGCAGCTGCAGTGAGTGGGAGCAATCTGGATAAGGCTCCTGTAAGTTTC
TCCATTCGGGCTCGCGATGACCAATGTCCATTGCAACACACTTTACCGCA
GGAGGCCAGCGACGAGGAGACTAGTTCGAATGCTGCTGGGGTGGAGCATG
TGCGACCAGGTATGCCAGATAGTGTGCAACGGGCCATCAAACAGGTTGAG
ACGCAGTTGTTGGCCAGGACCGCCGGGCAGAAGGGAAACATCACGGCTTC
CCCATCCTGTTCCTCACCACAAAAAGAGCAGCGGCAAGCTGAGGAGCGTG
TTAAGGATAAGCTGGCGCAGATTGCCCGCGAGAAGCTGAACGGAATGATT
TCACGCGAAAAACAATTGCAGTTGGAACGAAAGCGAAAGGCCTTGGCCTT
TCTAAATCAGATAAAAGGTGAGGGTGCCATTGTGGGCTCTGCTGTGCCTG
TTGTTGGTCCGAATCCTCCAGAGTCAGCGGCCGGAGCTGCGACCGCCGAC
AGTGGTGACGAGTCTGGTGATTCTGTACGTTCCATACCAATTACCTACTT
TGGCCCCGACGACGATGACGAAGTCGGTGAACAGAGGCCTGAGATGAGGC
TCATAGGGAGCACGCAGAAGGACGAGGAGGACGACGATGAAGAGGATGGC
GGCGATCTGGAGAAGTACAACTTGCTCAACGACGATAGCACGAACACCTT
CACCAGCAAACCCGTGCTTCCTCCCACCGCTGCTCCACCTCCTGCTGCTG
TTCTGCTTTCTGACGACGACGACGTCCAGCTTGTGGCCACTACCTCAACG
CGGTCCTCCAGCTCGCGCCATCTCAAAACCCACCGCCGGAGCAGAAGTCG
CAGTAAGAATGTCCGAAGCAGTGACAGCAGCCCTTCTAGTCGAGAGTCCT
CGCGCCGACGCCGCCAGAAGAGCAGCAGGCTTTCCAGGGAGCCATCATCG
AACCCGCCACGTAAGTCCCAGCATTCGTCAACGCAGCGAAAAAAGACCCC
CAAAAAGAGGAGGCGCAGCAAAAGTAGAAGTCGCTCTAAAAGCATCCGGC
GGAGTAGGAGCATAAGCATATTGAGAAACAACCGGCGGAGCAGATCGCGT
AGCCCCAGCTGTCGAAATGCAGAACAGCGACGCCAGCAGGACCGACGGCG
CACTCCCACTAAAAAGTCCCACAAGCGGCACAAGCGACGCAGGCGCAGCA
GCTCCCCCTGAAAGCTTTCTAGACCAT
BS22426.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(w[a])-RA | 2892 | CG3019-PA | 1..2892 | 17..2911 | 14365 | 99.8 | Plus |
| su(w[a])-RG | 2247 | CG3019-PG | 1..2247 | 665..2911 | 11220 | 100 | Plus |
| su(w[a])-RM | 483 | CG3019-PM | 1..466 | 17..485 | 2250 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(w[a])-RA | 3199 | CG3019-RA | 216..3107 | 17..2911 | 14365 | 99.8 | Plus |
| su(w[a])-RB | 4056 | CG3019-RB | 1362..3964 | 309..2911 | 13000 | 100 | Plus |
| su(w[a])-RM | 3355 | CG3019-RM | 836..3263 | 484..2911 | 12125 | 100 | Plus |
| su(w[a])-RB | 4056 | CG3019-RB | 217..509 | 17..312 | 1385 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1045153..1045948 | 2116..2911 | 3980 | 100 | Plus |
| X | 23542271 | X | 1043490..1044210 | 694..1414 | 3605 | 100 | Plus |
| X | 23542271 | X | 1044266..1044589 | 1413..1736 | 1605 | 99.7 | Plus |
| X | 23542271 | X | 1041111..1041403 | 17..312 | 1385 | 98.6 | Plus |
| X | 23542271 | X | 1044649..1044901 | 1736..1988 | 1265 | 100 | Plus |
| X | 23542271 | X | 1043211..1043421 | 484..694 | 1055 | 100 | Plus |
| X | 23542271 | X | 1042256..1042432 | 309..485 | 885 | 100 | Plus |
| X | 23542271 | X | 1044968..1045104 | 1986..2122 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:28:15 has no hits.
BS22426.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed on 2011-03-09 09:38:06 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:05 Download gff for
BS22426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(w[a])-RA | 216..3106 | 17..2910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:23 Download gff for
BS22426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(w[a])-RA | 216..3106 | 17..2910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:23 Download gff for
BS22426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1044971..1045099 | 1989..2117 | 100 | -> | Plus |
| X | 1041111..1041403 | 17..312 | 98 | -> | Plus |
| X | 1042260..1042432 | 313..485 | 100 | -> | Plus |
| X | 1043213..1043421 | 486..694 | 100 | -> | Plus |
| X | 1043491..1044210 | 695..1414 | 100 | -> | Plus |
| X | 1044268..1044589 | 1415..1736 | 99 | -> | Plus |
| X | 1044650..1044901 | 1737..1988 | 100 | -> | Plus |
| X | 1045155..1045947 | 2118..2910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:05 Download gff for
BS22426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 935144..935436 | 17..312 | 98 | -> | Plus |
| arm_X | 936293..936465 | 313..485 | 100 | -> | Plus |
| arm_X | 937246..937454 | 486..694 | 100 | -> | Plus |
| arm_X | 937524..938243 | 695..1414 | 100 | -> | Plus |
| arm_X | 938301..938622 | 1415..1736 | 99 | -> | Plus |
| arm_X | 938683..938934 | 1737..1988 | 100 | -> | Plus |
| arm_X | 939004..939132 | 1989..2117 | 100 | -> | Plus |
| arm_X | 939188..939980 | 2118..2910 | 100 | | Plus |
BS22426.pep Sequence
Translation from 16 to 2910
> BS22426.pep
MLPYNVRNAGGGSVGGILRRTGQGSGTGSTILGNGNSPGALGAGKVSSSS
LENHRQPPLELLVFGYACKIFRDDEKAREMDHGKQLIPWMGDVNLKIDRY
DVRGALCELAPHEAPPGGYGNRLEYLSAEEQRAEQLCEEERYLFLYNNEE
ELRLRQEEDLKRLQQETSGGCFSQVGFQYDGQSAASTSIGGSSTATSQLS
PNSEESELPFVLPYTLMMAPPLDMQLPETMKQHAIIEKTARFIATQGAQM
EILIKAKQANNTQFDFLTQGGHLQPYYRHLLAAIKAAKFPPAPQTPLDQQ
NTDKEAPSADDHSEEVAGGRRNPNQVVITVPTIKYKPSANCAYTQLISKI
KGVPLQAVLQEDESSNPGNSQHSGGTASPALSCRSEGHNSQGGEFTPVLL
QYNGSTFTHEEESSNREQQDDNDVNGGEPPQVELLKNTSALALAQNYSSE
SEEEEDQVQPEKEEEKKPEPVLTFPVPKDSLRHIIDKTATYVIKNGRQFE
ETLRTKSVDRFSFLLPANEYYPYYLYKVTGDVDAASKEEKTRKAAAVAAA
LMSKKGLSFGGAAAAVSGSNLDKAPVSFSIRARDDQCPLQHTLPQEASDE
ETSSNAAGVEHVRPGMPDSVQRAIKQVETQLLARTAGQKGNITASPSCSS
PQKEQRQAEERVKDKLAQIAREKLNGMISREKQLQLERKRKALAFLNQIK
GEGAIVGSAVPVVGPNPPESAAGAATADSGDESGDSVRSIPITYFGPDDD
DEVGEQRPEMRLIGSTQKDEEDDDEEDGGDLEKYNLLNDDSTNTFTSKPV
LPPTAAPPPAAVLLSDDDDVQLVATTSTRSSSSRHLKTHRRSRSRSKNVR
SSDSSPSSRESSRRRRQKSSRLSREPSSNPPRKSQHSSTQRKKTPKKRRR
SKSRSRSKSIRRSRSISILRNNRRSRSRSPSCRNAEQRRQQDRRRTPTKK
SHKRHKRRRRSSSP*
BS22426.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(w[a])-PA | 963 | CG3019-PA | 1..963 | 1..964 | 4919 | 99.9 | Plus |
| su(w[a])-PG | 748 | CG3019-PG | 1..748 | 217..964 | 3805 | 100 | Plus |
| su(w[a])-PM | 160 | CG3019-PM | 1..155 | 1..156 | 811 | 99.4 | Plus |
| su(w[a])-PJ | 186 | CG3019-PJ | 1..155 | 1..156 | 811 | 99.4 | Plus |
| su(w[a])-PI | 217 | CG3019-PI | 1..155 | 1..156 | 811 | 99.4 | Plus |
