Clone BS22441 Report

Search the DGRC for BS22441

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:224
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCSN8-RB
Protein status:BS22441.pep: full length peptide match
Sequenced Size:581

Clone Sequence Records

BS22441.complete Sequence

581 bp assembled on 2011-01-27

GenBank Submission: KX801478

> BS22441.complete
GAAGTTATCAGTCGACATGCATTTAAATAAATATAGTGAAGTAGTGGAGC
GGCTTGAGAACGAGGAATTTGAGCAAGTCGAACTGGGAGCTGAAGTCTAC
CAGCAATTACTTGCTATTTACCTCTATCAAAACAAACTGGCTGATGCCAA
GTTGTTGTGGATGAGAGTTCCAGCTAACCTAAGGGATGACAAGGAACTGA
TCCAGCTGAACCTGCTCAATATTGCCCTGCAGAACAATAACTATGCCGAT
TTCTTCAAACACATCAAGTATGAGTGGTCGGAAAGAGTAAAGTCACCTGT
GGAGGATCTTCTAAATAAGCAACGCGAAGAGCTGTTCAAACTAATGGGCA
GCGCATATATGTCCATTTACCAGCACAATCTACTGGAATTGTCACTAATG
TCGGAGGACGAACTGAAACACGCCTGTGCGGCCTTAAATTGGACTGAGGA
ACTGGACGGTGACCGGGTAATCCTGAAGCCCAAGGTTCAGGAAGCACCGC
CAGCTCGTGGAAACGATGACCAGTTGCTTAAGTTGACCGAGTTTGTAACC
TTCCTAGAGAATTAAAAGCTTTCTAGACCAT

BS22441.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
CSN8-RB 549 CG42522-PB 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
CSN8-RB 641 CG13383-RB 69..617 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8365389..8365639 315..565 1255 100 Plus
2L 23513712 2L 8365153..8365328 139..314 880 100 Plus
2L 23513712 2L 8365038..8365105 72..139 340 100 Plus
2L 23513712 2L 8364923..8364979 17..73 285 100 Plus
Blast to na_te.dros performed 2014-11-26 15:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
F-element 4708 F-element F 4708bp 2581..2611 116..146 119 87.1 Plus

BS22441.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:13 Download gff for BS22441.complete
Subject Subject Range Query Range Percent Splice Strand
CSN8-RB 92..638 17..563 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:27 Download gff for BS22441.complete
Subject Subject Range Query Range Percent Splice Strand
CSN8-RB 69..615 17..563 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:24 Download gff for BS22441.complete
Subject Subject Range Query Range Percent Splice Strand
CSN8-RB 69..615 17..563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:24 Download gff for BS22441.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8364923..8364979 17..73 100 -> Plus
2L 8365040..8365104 74..138 100 -> Plus
2L 8365153..8365328 139..314 100 -> Plus
2L 8365389..8365637 315..563 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:27 Download gff for BS22441.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8365153..8365328 139..314 100 -> Plus
arm_2L 8365389..8365637 315..563 100   Plus
arm_2L 8364923..8364979 17..73 100 -> Plus
arm_2L 8365040..8365104 74..138 100 -> Plus

BS22441.pep Sequence

Translation from 16 to 564

> BS22441.pep
MHLNKYSEVVERLENEEFEQVELGAEVYQQLLAIYLYQNKLADAKLLWMR
VPANLRDDKELIQLNLLNIALQNNNYADFFKHIKYEWSERVKSPVEDLLN
KQREELFKLMGSAYMSIYQHNLLELSLMSEDELKHACAALNWTEELDGDR
VILKPKVQEAPPARGNDDQLLKLTEFVTFLEN*

BS22441.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
CSN8-PB 182 CG13383-PB 1..182 1..182 937 100 Plus