BS22448.complete Sequence
905 bp assembled on 2011-01-27
GenBank Submission: KX801989
> BS22448.complete
GAAGTTATCAGTCGACATGATGACGCCCATGTGGATATCGCTGTTCAAAG
TCCTGCTGCTGCTGTTCGCCTTCTTTGCCACGATAGTTTATATCAATATC
GAATTAACGAAGCGACACGAGGCCGAGGTGAGGGCAGAGAAAACAGTGGC
AGACTATAAGGCCCTTTTGGCTACCATTAACAATGGCGGACCCGGAAAGT
CAGCATCTAATCACTTACAGTACGAGGCCAAGGAGTATGAACGTATCATC
AAAGAGCTTTTTACAATAACCAATGATGAGGGAGTTGTCCTCTTTAATAG
GACGGACACGGAGGTGCAATCCGAACAGCCGATACCCCCCCGACATCCAT
CGGATACCAAGTATCGGCCACCACAATCCCCAGCTCGTCCTTTGAGGAAT
GACACTAAGGAGCACAATCCCTGCGCCAAGGATGAAAGCCAACACCTTAG
AAACTTCTGCACGAATGTGGACGACTATCCGGACCTTTCAGGCCTCACAC
ATAAGCTAAAAAACAACTTCGCCAAGTTCTTTAGCAACGATCTTCAGCCC
ACGGATGTGAGCTCTCGCGTTGGTGGCTCAGATGAGCGATTCCTTTGCAG
GAGCATCAGGAAGCTGGTGTACCCAAAAAAGGGCTTGAGGGCGGACGACA
CCTGGCAGTTAATTGTCAATAACGATGAGTACAAACAGGCCATCCAGATC
GAAGAGTGCGAAGGAGCGGATCAACCCTGTGACTTTGCCGCCAACTTTCC
GCAGAGCTATAATCCAATCTGCAAGCAGCACTACACACAGCAGACCCTGG
CCAGCATCAAGAGTGATGGCGAACTGGACGTGGTGCAGAATTCCTTCAAG
ATCCCCTCCTGCTGCAAGTGCGCGTTGAAGACTGGGTGAAAGCTTTCTAG
ACCAT
BS22448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz-RK | 873 | CG6134-PK | 1..873 | 17..889 | 4275 | 99.3 | Plus |
| spz-RJ | 735 | CG6134-PJ | 66..735 | 220..889 | 3260 | 99.1 | Plus |
| spz-RL | 813 | CG6134-PL | 216..813 | 292..889 | 2870 | 98.7 | Plus |
| spz-RJ | 735 | CG6134-PJ | 1..66 | 17..82 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz-RK | 2118 | CG6134-RK | 861..1734 | 16..889 | 4280 | 99.3 | Plus |
| spz-RJ | 1882 | CG6134-RJ | 927..1596 | 220..889 | 3260 | 99.1 | Plus |
| spz-RL | 2058 | CG6134-RL | 1077..1674 | 292..889 | 2870 | 98.7 | Plus |
| spz-RJ | 1882 | CG6134-RJ | 861..927 | 16..82 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27066099..27066453 | 711..357 | 1730 | 99.2 | Minus |
| 3R | 32079331 | 3R | 27065854..27066031 | 889..712 | 845 | 98.3 | Minus |
| 3R | 32079331 | 3R | 27067358..27067496 | 220..82 | 695 | 100 | Minus |
| 3R | 32079331 | 3R | 27067122..27067204 | 298..216 | 415 | 100 | Minus |
| 3R | 32079331 | 3R | 27069144..27069210 | 82..16 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 27066601..27066665 | 363..299 | 295 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:54:11 has no hits.
BS22448.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:13 Download gff for
BS22448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RK | 860..1731 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:19 Download gff for
BS22448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RK | 862..1733 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:16 Download gff for
BS22448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RK | 862..1733 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:16 Download gff for
BS22448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27067358..27067495 | 83..220 | 100 | <- | Minus |
| 3R | 27069144..27069209 | 17..82 | 100 | | Minus |
| 3R | 27066099..27066453 | 357..711 | 99 | <- | Minus |
| 3R | 27066608..27066665 | 299..356 | 100 | <- | Minus |
| 3R | 27065855..27066031 | 712..888 | 98 | <- | Minus |
| 3R | 27067122..27067199 | 221..298 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:19 Download gff for
BS22448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22891577..22891753 | 712..888 | 98 | <- | Minus |
| arm_3R | 22891821..22892175 | 357..711 | 99 | <- | Minus |
| arm_3R | 22892330..22892387 | 299..356 | 100 | <- | Minus |
| arm_3R | 22892844..22892921 | 221..298 | 100 | <- | Minus |
| arm_3R | 22893080..22893217 | 83..220 | 100 | <- | Minus |
| arm_3R | 22894866..22894931 | 17..82 | 100 | | Minus |
BS22448.pep Sequence
Translation from 16 to 888
> BS22448.pep
MMTPMWISLFKVLLLLFAFFATIVYINIELTKRHEAEVRAEKTVADYKAL
LATINNGGPGKSASNHLQYEAKEYERIIKELFTITNDEGVVLFNRTDTEV
QSEQPIPPRHPSDTKYRPPQSPARPLRNDTKEHNPCAKDESQHLRNFCTN
VDDYPDLSGLTHKLKNNFAKFFSNDLQPTDVSSRVGGSDERFLCRSIRKL
VYPKKGLRADDTWQLIVNNDEYKQAIQIEECEGADQPCDFAANFPQSYNP
ICKQHYTQQTLASIKSDGELDVVQNSFKIPSCCKCALKTG*
BS22448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz-PK | 290 | CG6134-PK | 1..290 | 1..290 | 1546 | 100 | Plus |
| spz-PD | 273 | CG6134-PD | 1..273 | 1..290 | 1357 | 88.3 | Plus |
| spz-PJ | 244 | CG6134-PJ | 1..244 | 1..290 | 1258 | 84.1 | Plus |
| spz-PC | 253 | CG6134-PC | 1..253 | 1..290 | 1238 | 81.6 | Plus |
| spz-PL | 270 | CG6134-PL | 1..270 | 1..290 | 1150 | 78.1 | Plus |
