BS22471.complete Sequence
2765 bp assembled on 2011-02-16
GenBank Submission: KX802980
> BS22471.complete
GAAGTTATCAGTCGACATGTCGCGTTTCTTTGCCAACGGGTCCGAATCGG
AGTCCGAGTCCAGCGAGGAGGAGATCCAAGCGACCAACTTCAACAAAGCC
AGCGCCTTCCAATTCAGCGACGATGAGGAGGAGGTCAAGCGCGTGGTCCG
CTCCACGAAGGAGAAGCGTTACGAGAACCTCACCAGCATCATCAAAACCA
TTCGCAACCACAAGAAAATCAAGGATATTCCCAATACCCTGAGCAGCTTC
GAGGATCTGACGCGCGCCTACCAGAAGGCACTGCCGGTCATCTCAAAGGA
GGAGAACGGCATTACGCCGCGATTTTACATTCGCTGCCTGGCCGAGCTGG
AGGACTTCATCAACGAGGTGTGGGAGGATCGCGAGGGCAGGAAAAACCTT
TCCAAGAACAACTCCAAGTCGCTGGGCACTTTGCGCCAGAAGGTACGCAA
GTACATCAAGGACTTCGAGGACGATCTGTCGCGTTTCCGTGAAGCACCCG
ACCAGGAGAGCGAGGCCGAGGACGAGGTGGTTGCCCTGGAGAGCGACGGC
GGCGATGCTGGTGATGACAGCGACGCCGGAGTGAAGCCTACAGAAGCGGT
TCCGAAAGCTGTGAAGTCCGCGCCGGCAAAGGCTGCGCCCGCCGATGATG
ACGATTCCGATGACTCCATTGATTGGGACTCGGACTCTGAATCGGAGACC
GAGTCCTCTGACGATGAGAACCAGTATCAGAACATGCGCGAGCGATTCTT
GAAGCGTACTACCGAAAAGGAGGAAAAGGATGATGACAAGAGGAAGGACA
AGCGTAAGGAGCAGAAGACCAAGATCCGCAAGCGCGCCGAGGACGATGAA
GATGGCGAGTGGGAGACTGTGGTCAAGGGTCATGTAGTAGAGAAGCCCAA
GATGTTCGAAAAGGACGCAGAGATCGATGTTCCCCTAGTGCTGGCCAAGC
TGTTGGAAATTATGTCGGCTCGCGGCAAGAAGCGCACCGATCGCCGTCTG
CAGATCGATCTGCTTTTCGAGTTGAGGGACATCTCTGATCAGCACAACCT
GGGAACCGCCGTCTCCGTGAAGATTCATTTTAACATCATCTCGGCTATCT
ACGATTACAACCAGAAGATTTCCGAGCCCATGAAGCTAGAACACTGGGCC
CTGCTTCTGGAGGTAATGCAGAGCATGATGAAGCTCCTGCTGGCCAACGC
CGACATTATTATGAGCGAGAGCGTGGCCGAGGAGCATGAGGAGTACGCTA
CGTCACCGTTTTATGTGAGGGGATGCCCACTGGCTGCCGTGGAGCGCCTG
GATGACGAATTTGTTAAGCTGCTGAAGGAATGCGATCCACACTCCAACGA
CTACGTGTCCCGGCTGAAGGACGAGGTGAACGTGGTTAAGACTATTGAAC
TGGTGCTGCAGTATTTCGAGCGCTCTGGCACCAACAACGAGCGCTGTCGC
ATCTACCTGCGCAAGATCGAACATCTCTACTATAAGTTCGATCCGGAGGT
GCTGAAGAAGAAGCGCGGTGAGCTGCCAGCCACTACCTCCACCTCCGTAG
ACGTGATGGATAAGCTGTGCAAATTCATCTACGCTAAGGACGATACGGAT
CGTATCCGTACGAGGGCCATCCTGGCGCACATCTACCATCATGCTATGCA
CGACAACTGGTTCCAGGCCCGTGATTTGGTGCTGATGTCTCATCTGCAGG
ACAACATTGATGCCGCCGATCCCGCCACCCGCATCCTGTACAACCGTATG
ATGGCCAATCTGGGTCTGTGTGCCTTCCGCCAGGGCAACGTCAAGGATGC
GCATCACTGTCTAGTGGACTTGATGGTCACCGGCAAGCCCAAGGAGCTGC
TCGCTCAAGGACTGCTGCCTCAGCGCCAGCACGAGCGATCTGCCGAGCAG
GAGAAAATCGAGAAGCAACGCCAGATGCCATTCCATATGCACATCAACCT
TGAGTTGCTTGAATGTGTCTACCTGGTGTCCGCTATGCTGCTCGAAATTC
CTTACATTGCCGCCCATGAATTCGACGCCCGCCGCCGCATGATCAGTAAG
ACCTTCTACCAGCAGTTGCGTTCCTCGGAGCGTCAATCACTGGTGGGTCC
ACCAGAGTCGATGCGTGAGCATGTCGTGGCTGCTGCCAAGGCTATGCGTT
GCGGCAACTGGCAGGCGTGTGCCAACTTCATTGTCAACAAGAAGATGAAC
ACGAAAGTGTGGGACCTCTTCTACGAGTCTGATCGCGTGCGCGAGATGCT
GACCAAGTTCATTAAGGAAGAATCGCTGCGCACCTACCTGTTCACCTACT
CGAACGTCTACACCTCGATCAGCATTCCTTCGCTGGCGCAGATGTACGAG
CTGCCCGTGCCGAAAGTGCACTCCATCATCAGTAAGATGATCATCAACGA
GGAGCTCATGGCCAGCCTGGACGATCCATCCGAAACCGTGGGTATGCATC
GTTCGGAGCCATCGCGTCTTCAGGCCCTGGCCATGCAATTCGTGGACAAG
GTCACAAATCTGGTGGACGTCAACGAAAAGGTGTTCGACATGAAGCAGGG
CAACTTCTTCCAGCGCGGCAACATGGGCAATCGCGGTGACCGTGGCTACA
ACCGCAACCAGAACAACCAGGGCGGCAATTGGCTCGGCCAGCGGCGGGAT
CGCAACAACCGGAACCGTAACCAGCGCGGGCACCACAAGAACAACCAAGA
TAGGCAGCAGCAGCAACAGCAACAAGTCCAAACGATCGACGAGGAGTAGA
AGCTTTCTAGACCAT
BS22471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF3-S8-RB | 2733 | CG4954-PB | 1..2733 | 17..2749 | 13665 | 100 | Plus |
| eIF3-S8-RA | 2733 | CG4954-PA | 1..2733 | 17..2749 | 13665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF3-S8-RB | 3275 | CG4954-RB | 175..2908 | 17..2750 | 13670 | 100 | Plus |
| eIF3-S8-RA | 3143 | CG4954-RA | 94..2827 | 17..2750 | 13670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17666222..17668862 | 110..2750 | 13205 | 100 | Plus |
| 2R | 25286936 | 2R | 17666067..17666159 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6902 | 2561..2732 | 187 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6864 | 2599..2721 | 167 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2288..2396 | 2618..2725 | 163 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6857 | 2653..2753 | 159 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2476 | 2566..2724 | 139 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6796 | 2652..2725 | 135 | 68.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1156 | 2631..2725 | 120 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6775 | 2670..2725 | 118 | 67.9 | Plus |
BS22471.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:00 Download gff for
BS22471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S8-RA | 175..2907 | 17..2749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:19 Download gff for
BS22471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S8-RA | 94..2826 | 17..2749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:02 Download gff for
BS22471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S8-RA | 94..2826 | 17..2749 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:02 Download gff for
BS22471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17666067..17666159 | 17..109 | 100 | -> | Plus |
| 2R | 17666222..17668861 | 110..2749 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:19 Download gff for
BS22471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13553572..13553664 | 17..109 | 100 | -> | Plus |
| arm_2R | 13553727..13556366 | 110..2749 | 100 | | Plus |
BS22471.pep Sequence
Translation from 16 to 2748
> BS22471.pep
MSRFFANGSESESESSEEEIQATNFNKASAFQFSDDEEEVKRVVRSTKEK
RYENLTSIIKTIRNHKKIKDIPNTLSSFEDLTRAYQKALPVISKEENGIT
PRFYIRCLAELEDFINEVWEDREGRKNLSKNNSKSLGTLRQKVRKYIKDF
EDDLSRFREAPDQESEAEDEVVALESDGGDAGDDSDAGVKPTEAVPKAVK
SAPAKAAPADDDDSDDSIDWDSDSESETESSDDENQYQNMRERFLKRTTE
KEEKDDDKRKDKRKEQKTKIRKRAEDDEDGEWETVVKGHVVEKPKMFEKD
AEIDVPLVLAKLLEIMSARGKKRTDRRLQIDLLFELRDISDQHNLGTAVS
VKIHFNIISAIYDYNQKISEPMKLEHWALLLEVMQSMMKLLLANADIIMS
ESVAEEHEEYATSPFYVRGCPLAAVERLDDEFVKLLKECDPHSNDYVSRL
KDEVNVVKTIELVLQYFERSGTNNERCRIYLRKIEHLYYKFDPEVLKKKR
GELPATTSTSVDVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQ
ARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQGNVKDAHHCLV
DLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLEC
VYLVSAMLLEIPYIAAHEFDARRRMISKTFYQQLRSSERQSLVGPPESMR
EHVVAAAKAMRCGNWQACANFIVNKKMNTKVWDLFYESDRVREMLTKFIK
EESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEELMAS
LDDPSETVGMHRSEPSRLQALAMQFVDKVTNLVDVNEKVFDMKQGNFFQR
GNMGNRGDRGYNRNQNNQGGNWLGQRRDRNNRNRNQRGHHKNNQDRQQQQ
QQQVQTIDEE*
BS22471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF3-S8-PB | 910 | CG4954-PB | 1..910 | 1..910 | 4706 | 100 | Plus |
| eIF3-S8-PA | 910 | CG4954-PA | 1..910 | 1..910 | 4706 | 100 | Plus |
