BS22478.complete Sequence
1604 bp assembled on 2011-01-27
GenBank Submission: KX805369
> BS22478.complete
GAAGTTATCAGTCGACATGGCCGAAATCTTGGCACGCTTGACGCGTGTTT
CGGAAAACTACCTCCAAGAACTGGAGGAGGAGCCGGAGCCACAAGGACCG
CCCAAACTAACCAAGGCTCAGAAGAAGGCCGCCAAGAAAGAGGCCAAGCG
ACTGGCTATGATCGAGGAGAAGCGGCTCATCATGCGGGATGCCCTGATGC
GCGAGCTGGAGATGGGCAAGCATATGGAGGAGAAAGGCAACGAGGAGTGG
CACGAGATGTGCCGCGAAATCAAGATCAAGGAGCTAAACGAGGAGATGAG
GGCTTGGGGCGAGCGCTCGGAACGTAACATTCAGGCCAAGAACGACCACA
TCAAGATGCTTCTGGACGACATGGCGCAGACGCAGGATCAGCACGTGCGT
TGCTACAGCAAAACGGTGGAGCTGATTGATCACATTCGCGACTGCTTCCA
CGTGATGTTGGGCGGGGTGAAGAGCATGTATGACCAGCAGGCTGACGAGA
TGCTGAGGGATTACTATGAAGAGGTGCGCCGGCGCACCGAAGAGGTGGAA
GCCATGAAAACGAACTCCGAGAACATAATCCATGCCACCAACATCACCAC
CCGGGATCAGCTGAAGGAGGATTACACTATCTACCTGGAGCAGCGCGACG
ATCGCGTGAATACGGAGATTGAGAACAGATTTAAGATTCGAGATCAGATT
GTCCGCCGGATGACGCACATGCAGCAGCAACTGAACGACTTCGTGGAGTC
GCTGAGGAGCACCGAACTGGATGCCCACAAGTACGAGAAGATCCACTGGC
TGACGGAGCGGCAGGCGGCTTTCATGGAGGAGTCACGCAAGCTAAACGCC
GAGGAGTCCAAGTACATCAACATGCAGGCGGAACTGCAGCGCGAAATGGT
TCGCATGGATGCGGAGAACAACTCCACGCTCAACGATCTTCGCCTGGAGT
TCCAGTACTTCACCAACGTGCGCAAGAAGATTGAGCTCAACCAGGAGATG
GATCGCGAGATCACGCACGAGAAGTTGCGCATCCTGACCGGCGAGTGCTA
CGAGTTGACCAAGCAAATGGAGAAGCACGTGAAAAGTGGGGAATTACTCT
TGGCCCTGTCGATCACTTGCAGGAAACTGCAAACCGAATCGGAAAAGGTA
ATCCTCGGCGGCGAGGTATTCGACGAAACCGAGGTGGATGTCGATGAATA
CTTCAAGCTGCAGACTCTCAACCTGAAAGATCACGTGGACATGACCGAGG
AGGAACTCGTGGAGCTAAACAAAAGTCTCAGGAACTTCTGGCGCCGCCAG
GCGATGGCCGAAGCTCAAAACCTGCTGATGCTGGAGGAGAAGCGTCGCCT
CACTGAGGACAATCAGCGCCTGATCGACTTTATCAAATCCATGAGTGTCA
CCGAGGATCCGGAAGAGCTGCGAACCGCCATGCATGTTTCATCGCCAACT
CAACCCATGCCACCCAAACTTTTCGAGACAAAGTGCCAGGAATTCAAGTC
CAGAAAGGTCGTGCATTCACCGACGGCACACAAGGAGGCCAAGTGGGAGG
CCGAAGCCACTTTGAATGAGGTGATTCTGGACTTTTGAAAGCTTTCTAGA
CCAT
BS22478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10510-RA | 1572 | CG10510-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10510-RA | 1732 | CG10510-RA | 91..1664 | 17..1590 | 7870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21208798..21209674 | 1063..187 | 4385 | 100 | Minus |
| 3L | 28110227 | 3L | 21208216..21208744 | 1590..1062 | 2645 | 100 | Minus |
| 3L | 28110227 | 3L | 21209823..21209994 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:55:24 has no hits.
BS22478.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:15 Download gff for
BS22478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10510-RA | 91..1661 | 17..1587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:48 Download gff for
BS22478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10510-RA | 91..1661 | 17..1587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:48 Download gff for
BS22478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10510-RA | 91..1661 | 17..1587 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:48 Download gff for
BS22478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21209824..21209994 | 17..187 | 100 | | Minus |
| 3L | 21208219..21208742 | 1064..1587 | 100 | <- | Minus |
| 3L | 21208798..21209673 | 188..1063 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:48 Download gff for
BS22478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21201898..21202773 | 188..1063 | 100 | <- | Minus |
| arm_3L | 21201319..21201842 | 1064..1587 | 100 | <- | Minus |
| arm_3L | 21202924..21203094 | 17..187 | 100 | | Minus |
BS22478.pep Sequence
Translation from 16 to 1587
> BS22478.pep
MAEILARLTRVSENYLQELEEEPEPQGPPKLTKAQKKAAKKEAKRLAMIE
EKRLIMRDALMRELEMGKHMEEKGNEEWHEMCREIKIKELNEEMRAWGER
SERNIQAKNDHIKMLLDDMAQTQDQHVRCYSKTVELIDHIRDCFHVMLGG
VKSMYDQQADEMLRDYYEEVRRRTEEVEAMKTNSENIIHATNITTRDQLK
EDYTIYLEQRDDRVNTEIENRFKIRDQIVRRMTHMQQQLNDFVESLRSTE
LDAHKYEKIHWLTERQAAFMEESRKLNAEESKYINMQAELQREMVRMDAE
NNSTLNDLRLEFQYFTNVRKKIELNQEMDREITHEKLRILTGECYELTKQ
MEKHVKSGELLLALSITCRKLQTESEKVILGGEVFDETEVDVDEYFKLQT
LNLKDHVDMTEEELVELNKSLRNFWRRQAMAEAQNLLMLEEKRRLTEDNQ
RLIDFIKSMSVTEDPEELRTAMHVSSPTQPMPPKLFETKCQEFKSRKVVH
SPTAHKEAKWEAEATLNEVILDF*
BS22478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10510-PA | 523 | CG10510-PA | 1..523 | 1..523 | 2687 | 100 | Plus |
| CG30259-PA | 540 | CG30259-PA | 25..439 | 35..452 | 201 | 20.4 | Plus |
