BS22501.complete Sequence
353 bp assembled on 2011-01-25
GenBank Submission: KX802994
> BS22501.complete
GAAGTTATCAGTCGACATGTCGTATCAACTGTACCGCAACACCACGCTCG
GCAACACCCTGCAGGAGAGCCTCGACGAGCTGATTCAGTACGGCCAGATT
ACGCCCGGACTGGCTTTCAAGGTTCTGCTGCAATTCGACAAGAGCATCAA
CAATGCCCTAAACCAGCGGGTCAAGGCCCGCGTCACCTTCAAGGCTGGAA
AACTAAACACCTACCGCTTCTGCGACAATGTCTGGACTCTCATGCTTAAC
GATGTGGAGTTCCGCGAAGTGCACGAGATCGTCAAGGTGGACAAGGTGAA
GATCGTGGCCTGCGACGGCAAGAGCGGCGAGTTCTGAAAGCTTTCTAGAC
CAT
BS22501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-S-RA | 321 | CG5163-PA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-S-RA | 617 | CG5163-RA | 106..427 | 17..338 | 1610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23890578..23890830 | 338..86 | 1265 | 100 | Minus |
3R | 32079331 | 3R | 23890884..23890955 | 88..17 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:28:03 has no hits.
BS22501.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:26 Download gff for
BS22501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-S-RA | 102..421 | 17..336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:14 Download gff for
BS22501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-S-RA | 106..425 | 17..336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:39 Download gff for
BS22501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-S-RA | 106..425 | 17..336 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:39 Download gff for
BS22501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23890580..23890827 | 89..336 | 100 | <- | Minus |
3R | 23890884..23890955 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:14 Download gff for
BS22501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19716302..19716549 | 89..336 | 100 | <- | Minus |
arm_3R | 19716606..19716677 | 17..88 | 100 | | Minus |
BS22501.pep Sequence
Translation from 16 to 336
> BS22501.pep
MSYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQ
RVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEIVKVDKVKIVACD
GKSGEF*
BS22501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-S-PA | 106 | CG5163-PA | 1..106 | 1..106 | 547 | 100 | Plus |
TfIIA-S-2-PA | 107 | CG11639-PA | 1..101 | 1..101 | 278 | 55.4 | Plus |