BS22508.complete Sequence
1706 bp assembled on 2011-02-18
GenBank Submission: KX801629
> BS22508.complete
GAAGTTATCAGTCGACATGGCCATGGACTTTGACGAGATACTGGTCAAAT
GCGGCGACTCCCATCGCTACCAGTACATGCTATTGGCTCTCTACGGACTA
TTGATGTTCATTGTTTCCCGGCACTACTTCGCCCAAAACGTTATTGGATT
TGTGCCCGATCATTGGTGCTATCACGAACAGCTGGAGAATCGTAGCTATG
CCGAAATAGCTGCGATATACGCCCCATTCAAGAGGCCTTCGTGCACGCGA
CTGGCATCGATCAACATGGATGGGAGCAATGCCACGGCCAGCAGTGAGCC
CTGCAATCGATGGATTTACCACTATGACCATGGATTCATAAGCATGAACG
CTGATCTGAATTGGGTTTGTGATGATGCGTACAAGGCTCGAGTGGGTCAG
TCCCTGTTCTTTGTGGGCTCCATGTGTGGCACCCTGTTGTTTGGTCTACT
TGGCGATCGAATCGGACGCATCAAGGCTGTAGTTTTGGCCAATTGCTGTG
GCTTCCTGGGCGACTCGGCTACCATTTTTGCAGAGACCCTGTTGACTTTC
TCGGCCAGCCGATTTGTATCTGGACTGGCTGCAGAGGCAAACTCCTACCT
CATGTTTATTTTGGTCTTGGAGTACGTGTCTCCGACGATGCGAAGTGTGG
GCTTGAACTTGACAATGTGTGTTTTTTACGGCCTGGGAATGATATGTGCA
TCTTGGCAGGGCGTCTGGTTGGGTAGTTGGCGTTCCTTCATGGTCTGGAC
CGCCCTGCCCCAGCTGTTGGTCACCGGGTTCTACTTTCTGATTCAGGAGA
GCGCACAGTGGCTGGTCACGCGCCAAGACTTCGATGGAGCTGAGTTGAGG
CTACGCCGTGTGGCCAAGTTCAATCGGCGCGATGTCAGCGAGGCGGACTA
TGAGCTATTCCGTCAGCATTGCAAGACGAAGGAGTCGGAGGCCAGAAGCC
AGATGTCCATGCAGAAGCAGGCACGTCTCATTGACTCATTCAAGCTGCCA
CGCCTGCGTCTCCGCCTGATCTATGTAACGGTTGTCTTCTCGATAGTGAC
GCTTTGTTACAACACAATGTCTCGCAATGTGGAAGGTCTGAGCATATCAC
CGTTCGTCATGTTCAGCCTTTTCGCCCTGACCTTGCCACCATCAGGCATC
TTCCAGACCCAGGTCCAGAAGCACTTCGGCCGCAAGTTCACCTCGGTGGT
CAGCATGACAGCAACTGGATTGATGACTGCGACCACAGGCATTCTCTTGG
CTTTCTGGACGCAGCATAGCGCCACGGTGATGGTGTGCCTTCTGCTGATG
TGCCGGTTCGGGATCTCCGTGACTACGGGATCCACCATGCAGATATCGAC
TGAGCTAATGCCCACCTGTGTGAGATCCAGTGGTTTGGCGGTAATTCATG
TCACCGCAGCAGCATTGTCCTTCATTTCGCCATTTATACTCCATTTGGAC
ACATATTTCCGGGCAGCATCCTCGATCATTACCTGCATTCTACTCCTAGT
TAGCGCCTGGATTTGCCTGCTCCTGTCGGAGACGAGAAACAAAAAGCTGC
CTTTAACATTAGCGGAGGGCGAGGAGTTTGGCAAGGGCGAGCGGATGTTC
GACTTTATGAGAAGCTTTAAAAAGGCAGATCAACACGATCTCAGTGCTGA
CACCATAGAAAAACTAATGGGGGATAAGCGTACTTACTAAAAGCTTTCTA
GACCAT
BS22508.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14856-RA | 1674 | CG14856-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
| CG14855-RA | 1671 | CG14855-PA | 99..583 | 121..605 | 670 | 75.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14856-RA | 1999 | CG14856-RA | 84..1760 | 14..1690 | 8385 | 100 | Plus |
| CG14855-RA | 1973 | CG14855-RA | 345..829 | 121..605 | 670 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14800273..14800924 | 1039..1690 | 3260 | 100 | Plus |
| 3R | 32079331 | 3R | 14799789..14800213 | 614..1038 | 2125 | 100 | Plus |
| 3R | 32079331 | 3R | 14799069..14799410 | 14..355 | 1710 | 100 | Plus |
| 3R | 32079331 | 3R | 14799475..14799733 | 356..614 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 14796958..14797201 | 362..605 | 395 | 77.5 | Plus |
| 3R | 32079331 | 3R | 14796649..14796843 | 121..315 | 300 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:21:10 has no hits.
BS22508.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:43 Download gff for
BS22508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14856-RA | 83..1754 | 17..1688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:50 Download gff for
BS22508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14856-RA | 87..1758 | 17..1688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:35 Download gff for
BS22508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14856-RA | 87..1758 | 17..1688 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:35 Download gff for
BS22508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14799072..14799410 | 17..355 | 100 | -> | Plus |
| 3R | 14799475..14799733 | 356..614 | 100 | -> | Plus |
| 3R | 14799790..14800213 | 615..1038 | 100 | -> | Plus |
| 3R | 14800273..14800922 | 1039..1688 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:50 Download gff for
BS22508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10624794..10625132 | 17..355 | 100 | -> | Plus |
| arm_3R | 10625197..10625455 | 356..614 | 100 | -> | Plus |
| arm_3R | 10625512..10625935 | 615..1038 | 100 | -> | Plus |
| arm_3R | 10625995..10626644 | 1039..1688 | 100 | | Plus |
BS22508.pep Sequence
Translation from 16 to 1689
> BS22508.pep
MAMDFDEILVKCGDSHRYQYMLLALYGLLMFIVSRHYFAQNVIGFVPDHW
CYHEQLENRSYAEIAAIYAPFKRPSCTRLASINMDGSNATASSEPCNRWI
YHYDHGFISMNADLNWVCDDAYKARVGQSLFFVGSMCGTLLFGLLGDRIG
RIKAVVLANCCGFLGDSATIFAETLLTFSASRFVSGLAAEANSYLMFILV
LEYVSPTMRSVGLNLTMCVFYGLGMICASWQGVWLGSWRSFMVWTALPQL
LVTGFYFLIQESAQWLVTRQDFDGAELRLRRVAKFNRRDVSEADYELFRQ
HCKTKESEARSQMSMQKQARLIDSFKLPRLRLRLIYVTVVFSIVTLCYNT
MSRNVEGLSISPFVMFSLFALTLPPSGIFQTQVQKHFGRKFTSVVSMTAT
GLMTATTGILLAFWTQHSATVMVCLLLMCRFGISVTTGSTMQISTELMPT
CVRSSGLAVIHVTAAALSFISPFILHLDTYFRAASSIITCILLLVSAWIC
LLLSETRNKKLPLTLAEGEEFGKGERMFDFMRSFKKADQHDLSADTIEKL
MGDKRTY*
BS22508.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14856-PA | 557 | CG14856-PA | 1..557 | 1..557 | 2895 | 100 | Plus |
| CG14855-PA | 556 | CG14855-PA | 1..527 | 3..532 | 1706 | 60.4 | Plus |
| CG6231-PF | 585 | CG6231-PF | 1..543 | 3..549 | 1515 | 52 | Plus |
| CG6231-PE | 585 | CG6231-PE | 1..543 | 3..549 | 1515 | 52 | Plus |
| CG6231-PA | 585 | CG6231-PA | 1..543 | 3..549 | 1515 | 52 | Plus |
