BS22512.complete Sequence
2288 bp assembled on 2011-02-18
GenBank Submission: KX805967
> BS22512.complete
GAAGTTATCAGTCGACATGTCCCACGGCGATGTGGACCCCGAGGTAGAGA
TGACATCGCCCCACCGTATTCATGGGGACGCAGGAAGTCACCCAAGGTCG
CAGACATTCTGGAAGCTACAGTGCTGGCGGAGCAGCATGCTGCTCATAGT
CGGATTTGCATTGTGCGTCCTCGCGCCTGGATGCAGCGCCACGGACACTG
ACATCGCTCTGGACGCCAAGGCCACGCTCAATCACCGCATCCAGAGCCTG
GACCTTCTAGTCTTCGTGTTCCTGCTGGCGCTCACAGTGCTCACAATTTG
GCTTTTCAAACACCATCGCGTCTCCTGGCTCCACGAGACGGGATTGGCCG
TCATCTACGGCTTGATTGTGGGTGCAATTATACGATATGCCGGCACCTCC
GCCACCCTGGTCCACATGCAGGTGGAGCCTCAGGGAGTTCCAACGTACAG
CGATAAATTGCCGCCTGATACTCTTTGGTTTAGGTACCCCGTTAATCAAA
CAAATGGCACAAAGCCGCCAGAGGGAATCAAGACGTATGCCTACGTGTTT
CGAGGACAGGTACACGATGTGGATGAGAACGAAATCGATCTTAAGGCAAC
GTTCGATCCGGAGGTATTTTTCAATATTATCCTGCCCCCAATTATCTTTT
ATGCGGGCTATAGCTTGAAAAAGAAATACTTCTTTCGCAACTTGGGTGCC
ATACTTACGTTTGCCATTGTGGGCACGACTTTGTCGGCCTTCCTAATCGG
AGGCTTCATGTACGGCTGTGTGAAACTGATGCCAAAGTACTTGAGTAGCA
GTTTCACATTCCTGGACTCCTTATACTTTGGAGCTCTGATATCGCCCACA
GATCCGCTCACCATTCTAGCCATATTCAACGATCTTAGGGTCGACGTAAA
CCTATATGCGCTGGTCTTGGGCGAATCTGTGCTCAACGATGCCGTGGCCA
TAGTCCTTAGTGGAGCCATTCAAAATTATGGTGAACACTATTCCAATACC
GGGGAATTCGAAACTACAGCTTTTCTACGCTCGTTGAGCGATTTCTTCTC
CATCTTCTTACTATCCCTGATGATTGGCGCGGCCATGGGATGCTTGACAG
CATTGATGACCAAATTTACTCGGGTTCGAGACTTTCCTTTGCTAGAATCC
GCGCTCTTCGTGCTCATGAGCTACAGCACCTTCCTGCTGGCTGAGGCTAC
GGAACTTACTGGTGTGGTGGCCGTGCTCTTCTGCGGCATCTGCCAGGCTC
ACTACACGTACAACAACTTGTCGGAGGACTCGCGCCAAAGGACAAAACAG
ATATTCGAGCTCCTGAACTTTCTAGCCGAGAATTTTATCTTTTCCTACAT
TGGCGTATCGATGTTCACCTTTCCCAAGCATCATTTTGACGCCGGTTTCA
TTATAACAGCTTTTATTTGCGCTGCCATTGGAAGGGCGGTGAATGTGTAT
CCCTTGTCCTGGCTGCTGAACATAAAGCGAAAGCCGAAAATTTCCACAAA
CTTTCAGCATATGTTGTTCTTTGCTGGACTTCGTGGCGCCATGTCCTTTG
CCTTGGCCATCCGAAATACAGTGTCGGACGAACGACAGACGATGCTGACT
GCCACATCGCTGATTGTCATCTTTACGGTTGTAATTCAGGGTGGGGCTGC
AAATTTCCTGCTTAATTGGTTGAAAATACCCGTTGGCGTGGACGATGAGA
CTGAACAACTCAATAACTATCAAGTGCACAGTGTTTACAATTCAATGGAC
AATTCACATCCACAGACGTCTGATGGTTATTTGCAGGATGTGGAGGGCGG
TGGCGTTAATCGCAACAAGATGCGCTTGTCCGGTGGAACAGATACGAACT
TGGACACGCCCGTCGATGGTACGAATGGCAGTTTGGGCGGAGCAAGCGGC
GGTCGCCGGCGCAACAGCCACGAGAAGGCCATTCTTGCTAGGATCTGGGG
AAACTTTGATACCAAGTACATGAAGCCCTTACTGACGCACTCGCGACCCA
CTTTGCTGGAGACGCTGCCCGTTTGCTGCAATCCCATTGCCAGACTGCTC
ACCACCACACAGCAACTAACGCAGGATGGAAGCGAGTTCAGACGCGTGGA
CTCGGACTCGGACATTTGCATAGACAATGATACCGGGAACGGTCTCAGTC
AGGATGGGTCCGGAGCGGCACCAGGCGTGGGGCGTCGGAACTCCCTGAGT
CGCTCTGTTCACTTGAACGAAGCCAATCACCTTGCAAACGAACTCAGCCT
GGTTGCTAACAATTTCATGTAAAAGCTTTCTAGACCAT
BS22512.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nhe3-RD | 2136 | CG11328-PD | 1..2136 | 137..2272 | 10665 | 100 | Plus |
| Nhe3-RG | 2046 | CG11328-PG | 1..1597 | 137..1733 | 7970 | 99.9 | Plus |
| Nhe3-RH | 2091 | CG11328-PH | 1..1597 | 137..1733 | 7970 | 99.9 | Plus |
| Nhe3-RG | 2046 | CG11328-PG | 1597..2013 | 1787..2203 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nhe3-RD | 3749 | CG11328-RD | 290..2545 | 17..2272 | 11265 | 100 | Plus |
| Nhe3-RG | 3344 | CG11328-RG | 290..2006 | 17..1733 | 8570 | 99.9 | Plus |
| Nhe3-RH | 2819 | CG11328-RH | 297..2013 | 17..1733 | 8570 | 99.9 | Plus |
| Nhe3-RG | 3344 | CG11328-RG | 2006..2422 | 1787..2203 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6683725..6684068 | 360..17 | 1720 | 100 | Minus |
| 2L | 23513712 | 2L | 6681464..6681772 | 1414..1106 | 1545 | 100 | Minus |
| 2L | 23513712 | 2L | 6682141..6682432 | 963..672 | 1445 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6680344..6680543 | 1967..1768 | 1000 | 100 | Minus |
| 2L | 23513712 | 2L | 6682495..6682684 | 673..484 | 950 | 100 | Minus |
| 2L | 23513712 | 2L | 6681065..6681219 | 1680..1526 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 6681941..6682085 | 1107..963 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 6679986..6680117 | 2203..2072 | 660 | 100 | Minus |
| 2L | 23513712 | 2L | 6682746..6682871 | 484..359 | 630 | 100 | Minus |
| 2L | 23513712 | 2L | 6681278..6681390 | 1527..1415 | 565 | 100 | Minus |
| 2L | 23513712 | 2L | 6680174..6680283 | 2075..1966 | 550 | 100 | Minus |
| 2L | 23513712 | 2L | 6679194..6679262 | 2272..2204 | 345 | 100 | Minus |
| 2L | 23513712 | 2L | 6680945..6680998 | 1734..1681 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:38:46 has no hits.
BS22512.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:50 Download gff for
BS22512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nhe3-RD | 290..2543 | 17..2270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:28 Download gff for
BS22512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nhe3-RD | 290..2543 | 17..2270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:52 Download gff for
BS22512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nhe3-RD | 290..2543 | 17..2270 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:52 Download gff for
BS22512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6683726..6684068 | 17..359 | 100 | | Minus |
| 2L | 6681464..6681770 | 1108..1414 | 100 | <- | Minus |
| 2L | 6681941..6682084 | 964..1107 | 100 | <- | Minus |
| 2L | 6682141..6682430 | 674..963 | 99 | <- | Minus |
| 2L | 6682495..6682683 | 485..673 | 100 | <- | Minus |
| 2L | 6682746..6682870 | 360..484 | 100 | <- | Minus |
| 2L | 6679196..6679262 | 2204..2270 | 100 | <- | Minus |
| 2L | 6679986..6680114 | 2075..2203 | 100 | <- | Minus |
| 2L | 6680175..6680283 | 1966..2074 | 100 | <- | Minus |
| 2L | 6680346..6680542 | 1769..1965 | 100 | <- | Minus |
| 2L | 6680671..6680706 | 1733..1768 | 100 | <- | Minus |
| 2L | 6680947..6680998 | 1681..1732 | 100 | <- | Minus |
| 2L | 6681065..6681218 | 1527..1680 | 100 | <- | Minus |
| 2L | 6681279..6681390 | 1415..1526 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:28 Download gff for
BS22512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6681279..6681390 | 1415..1526 | 100 | <- | Minus |
| arm_2L | 6680671..6680706 | 1733..1768 | 100 | <- | Minus |
| arm_2L | 6680947..6680998 | 1681..1732 | 100 | <- | Minus |
| arm_2L | 6679196..6679262 | 2204..2270 | 100 | <- | Minus |
| arm_2L | 6679986..6680114 | 2075..2203 | 100 | <- | Minus |
| arm_2L | 6680175..6680283 | 1966..2074 | 100 | <- | Minus |
| arm_2L | 6680346..6680542 | 1769..1965 | 100 | <- | Minus |
| arm_2L | 6681065..6681218 | 1527..1680 | 100 | <- | Minus |
| arm_2L | 6681464..6681770 | 1108..1414 | 100 | <- | Minus |
| arm_2L | 6681941..6682084 | 964..1107 | 100 | <- | Minus |
| arm_2L | 6682141..6682430 | 674..963 | 99 | <- | Minus |
| arm_2L | 6682495..6682683 | 485..673 | 100 | <- | Minus |
| arm_2L | 6682746..6682870 | 360..484 | 100 | <- | Minus |
| arm_2L | 6683726..6684068 | 17..359 | 100 | | Minus |
BS22512.pep Sequence
Translation from 16 to 2271
> BS22512.pep
MSHGDVDPEVEMTSPHRIHGDAGSHPRSQTFWKLQCWRSSMLLIVGFALC
VLAPGCSATDTDIALDAKATLNHRIQSLDLLVFVFLLALTVLTIWLFKHH
RVSWLHETGLAVIYGLIVGAIIRYAGTSATLVHMQVEPQGVPTYSDKLPP
DTLWFRYPVNQTNGTKPPEGIKTYAYVFRGQVHDVDENEIDLKATFDPEV
FFNIILPPIIFYAGYSLKKKYFFRNLGAILTFAIVGTTLSAFLIGGFMYG
CVKLMPKYLSSSFTFLDSLYFGALISPTDPLTILAIFNDLRVDVNLYALV
LGESVLNDAVAIVLSGAIQNYGEHYSNTGEFETTAFLRSLSDFFSIFLLS
LMIGAAMGCLTALMTKFTRVRDFPLLESALFVLMSYSTFLLAEATELTGV
VAVLFCGICQAHYTYNNLSEDSRQRTKQIFELLNFLAENFIFSYIGVSMF
TFPKHHFDAGFIITAFICAAIGRAVNVYPLSWLLNIKRKPKISTNFQHML
FFAGLRGAMSFALAIRNTVSDERQTMLTATSLIVIFTVVIQGGAANFLLN
WLKIPVGVDDETEQLNNYQVHSVYNSMDNSHPQTSDGYLQDVEGGGVNRN
KMRLSGGTDTNLDTPVDGTNGSLGGASGGRRRNSHEKAILARIWGNFDTK
YMKPLLTHSRPTLLETLPVCCNPIARLLTTTQQLTQDGSEFRRVDSDSDI
CIDNDTGNGLSQDGSGAAPGVGRRNSLSRSVHLNEANHLANELSLVANNF
M*
BS22512.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nhe3-PD | 711 | CG11328-PD | 1..711 | 41..751 | 3673 | 100 | Plus |
| Nhe3-PJ | 682 | CG11328-PJ | 1..678 | 41..730 | 3473 | 98.1 | Plus |
| Nhe3-PE | 687 | CG11328-PE | 1..677 | 41..729 | 3472 | 98.3 | Plus |
| Nhe3-PG | 681 | CG11328-PG | 1..671 | 41..729 | 3434 | 97.4 | Plus |
| Nhe3-PH | 696 | CG11328-PH | 1..671 | 41..729 | 3434 | 97.4 | Plus |
