BS22514.complete Sequence
1730 bp assembled on 2011-02-15
GenBank Submission: KX802420
> BS22514.complete
GAAGTTATCAGTCGACATGGTCCAGGATGAGAAGGCGGCCCACGCCGATG
GCGCCGACGAACAGATGCTGGGCTCCAACGGAGTGGAGGATAAGCTGGCC
GAGCGTCGGGATGAGGTTAAGTTCATCAAGGGCGATCACCAGAACGGAGA
TGCCAAGATCGACATCGGAACCGTAAACGGAGGCAAGCCCGCCTTCACTG
GTATGAGCAAGGAGGAGCTCATGAAGTACGCCAACGACCCTTTCTGGGTG
CGACTCCGCTGGATCTTCTTCGTGTGCTTCTGGGCCATTTGGGTGGGCAT
GCTGGTGGGCGCCATCCTAATCATCATCGGAGCCCCCAAGTGCGCTGCTC
CGCAGCCACTTCCATGGTACAAGCGTGGACCACATGCCAAGTTCGCCAGC
GTTGAGACCTGTAGGCCAGAGGATGTTCAGGTCGCCAAAAAACTGGTTTC
CGCTGGCGCGATTTATGAGCTTCCAGCTGCTCTGACCTACGACGTGAAGA
AGCCGGAGGTGGAGGAGAAGATCAAGCATTTGGTGGCTCTGTACCAGGGC
AGCGATACCAGGGTTATACTTGACCTGACGCCCAACTACGCGGCAAAGAA
CTCGCAGCTTGTGCAGGATGCCATTGCAAACCCGGAGAAGAGATCGGCCT
TTGTCTGGGTGAGCGGCGGTAAAGCTCTTCCCAACAACTGGCTCAAGGTG
GGCGGCAATCGCAGCGCCTGGGAAAAGGTTGGAGACAACTATGTGCTCTC
CCAGTTCGAAGACGGGTACTACGACCTCAAGATGAACAGTACCATCATTA
GGAACGAGTTCGGAGCAGTCCTAAAGCATCTGGTGGCATTGGGCGTTCGA
GGCTTCCGCCTGAAGAATACCAAGTTCTTTGCGCTATTCGATAGCCTCGA
GGATGAGCAGATCTCGTCATCGCCGAAGGACTTCAGCCTGGGACCCAATG
AATATGGCTTCTACTCCCACAGACAAACAACTTTCCTATCCGGCCTGGGC
GATGTGCTCTATGATTACCTGAGCATCGTGAAGAATGCCTCCGACGAGGC
TTTCTTCTCGGTTGCCGAAGATGTCATGGAACCACAGGTGTACCAGTTGA
GCGGGGATTCTGGAGCATACGGCATCGATCTGCCTATGTACGGAAACTTT
GTAAAGGTGCTCAGCAAATCTAAGCCAGACACGTCGCTACAGAAGGAACT
GGATAACACACTCGCCCAATCGGGCACGGACAGCTGGCTGCAGTGGAACT
TAGCGGACGTCTATGTCGACACCCCACAGGATCCATCTGCTCTGGCCATG
TTCCTATCCCTGCTGCCCGGTGTTCCCGTGGTGGCTGTGGATGCTGTGGC
TTATCAAAACGTTACCGAGGAGACCTACAGGCAGATCACCTCTCTGCGCA
AGACTGCATCCTACATGCATGGAAATCTTAATCTCTACCAGGCCGATCCA
CTGGTCGCCTTCTCCAGGATCAAGTCTGGAAACCCTGGCTACTTTGTCAT
CTTCAATCCCACCGAACTGCCGCAGGCGAGCAACTTTACTATCCCAGACA
ATCTGCCGGACAAGATGACGGTGTCCTATTTCAGCGAGCAGTACAACAAT
AACATGGATAACTCCGGAAAGGTTGCTCATGCTGGACGCGTGAATCTCAA
GGATCTCAAGGTGGCCCCGCACTCCAGCATTATCCTGACCTATGTGCCAG
TGAAGGCGGAGTAAAAGCTTTCTAGACCAT
BS22514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CD98hc-RB | 1698 | CG2791-PB | 1..1698 | 17..1714 | 8475 | 99.9 | Plus |
| CD98hc-RF | 1698 | CG2791-PF | 1..1698 | 17..1714 | 8475 | 99.9 | Plus |
| CD98hc-RA | 1698 | CG2791-PA | 1..1698 | 17..1714 | 8475 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CD98hc-RB | 2271 | CG2791-RB | 357..2061 | 10..1714 | 8510 | 99.9 | Plus |
| CD98hc-RF | 2198 | CG2791-RF | 284..1988 | 10..1714 | 8510 | 99.9 | Plus |
| CD98hc-RA | 2121 | CG2791-RA | 207..1911 | 10..1714 | 8510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7975136..7976413 | 1468..191 | 6375 | 99.9 | Minus |
| 3R | 32079331 | 3R | 7974619..7974868 | 1714..1465 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 7976889..7977070 | 191..10 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:44:53 has no hits.
BS22514.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:33 Download gff for
BS22514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CD98hc-RA | 211..1906 | 17..1712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:57 Download gff for
BS22514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CD98hc-RA | 214..1909 | 17..1712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:06 Download gff for
BS22514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CD98hc-RA | 214..1909 | 17..1712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:06 Download gff for
BS22514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7974621..7974865 | 1468..1712 | 100 | <- | Minus |
| 3R | 7975137..7976413 | 191..1467 | 99 | <- | Minus |
| 3R | 7976890..7977063 | 17..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:57 Download gff for
BS22514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3800343..3800587 | 1468..1712 | 100 | <- | Minus |
| arm_3R | 3800859..3802135 | 191..1467 | 99 | <- | Minus |
| arm_3R | 3802612..3802785 | 17..190 | 100 | | Minus |
BS22514.pep Sequence
Translation from 16 to 1713
> BS22514.pep
MVQDEKAAHADGADEQMLGSNGVEDKLAERRDEVKFIKGDHQNGDAKIDI
GTVNGGKPAFTGMSKEELMKYANDPFWVRLRWIFFVCFWAIWVGMLVGAI
LIIIGAPKCAAPQPLPWYKRGPHAKFASVETCRPEDVQVAKKLVSAGAIY
ELPAALTYDVKKPEVEEKIKHLVALYQGSDTRVILDLTPNYAAKNSQLVQ
DAIANPEKRSAFVWVSGGKALPNNWLKVGGNRSAWEKVGDNYVLSQFEDG
YYDLKMNSTIIRNEFGAVLKHLVALGVRGFRLKNTKFFALFDSLEDEQIS
SSPKDFSLGPNEYGFYSHRQTTFLSGLGDVLYDYLSIVKNASDEAFFSVA
EDVMEPQVYQLSGDSGAYGIDLPMYGNFVKVLSKSKPDTSLQKELDNTLA
QSGTDSWLQWNLADVYVDTPQDPSALAMFLSLLPGVPVVAVDAVAYQNVT
EETYRQITSLRKTASYMHGNLNLYQADPLVAFSRIKSGNPGYFVIFNPTE
LPQASNFTIPDNLPDKMTVSYFSEQYNNNMDNSGKVAHAGRVNLKDLKVA
PHSSIILTYVPVKAE*
BS22514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CD98hc-PB | 565 | CG2791-PB | 1..565 | 1..565 | 2955 | 100 | Plus |
| CD98hc-PF | 565 | CG2791-PF | 1..565 | 1..565 | 2955 | 100 | Plus |
| CD98hc-PA | 565 | CG2791-PA | 1..565 | 1..565 | 2955 | 100 | Plus |
| CD98hc-PD | 567 | CG2791-PD | 1..567 | 1..565 | 2942 | 99.6 | Plus |
