BS22516.complete Sequence
2879 bp assembled on 2011-02-18
GenBank Submission: KX801516
> BS22516.complete
GAAGTTATCAGTCGACATGGCGGAACCTTTAGCAGTGGAAACCAAGCCGC
TGAGCAACGGAAATGCCAATGGAAACGCAGTGGGAATCGCCGAATCCGCC
AGCGCTGTCTTCCAGGAGAAGTTGAAGCTCCAGCAGCAGGAGGAGTCCAA
CGAGATCGCGGCAGTGCCGAAGTACGGACTCAAGCTGAAGTTCGACCATG
TGTGGCCGGAAAAGAGGATCCAGAATGTGCGGGCCTCCATCAGGCAAACG
CTGCCCATGGTGCCACTCGTCTGCAGATATGCGGCCTACTACTGGAAAGT
GTCGCGTGAAGGTCGTCGGGTGTACATGGACTACTACTACATGGAGAATG
GCAAGCAGATCTATGGAGTGCCCATCGGCGGAATTGGAGGTGGTACGATT
GGCAGGGGCTATGCCGGCGAGTTCTGCCGTTTCCAGATGCGTCCCGGCAT
CTACGAGTACAATGTGGTGCTGGCCAATCAGTTTATCGTTACCATCAAGG
ATCCCAAAGGATGCACCATCTTTCAGAGCCTCCTCTCGAAGTGCAGCACC
AGGGACAAGACCAGCGATCCGGATGGCGATCCGGATGGGGAAAGAACTAA
ATGTCAACTGCCCAATTGCAGCAGTCGCGCCAAGCAGCCGCTGAGTGCCT
GGCACTCGAACATCGAGGACACGCGCTGCAGCTACACGGGTCTCTATCCT
CGCTCCTGGACGGAGTACGATCTGTCCCACTATGGAGTCCGTCTGACCTG
TCGCCAGGTATCGCCGGTAATACCGCATGAGTACCGCGAGTCCAGCCTAC
CGTGCGCCGTCTTCGTGTGGAGCGTGGAGAATGTTTGCGACCAGGAGCGC
AAGGTGTCCATCACGTTCACTTTCAAGAACGGCACAGGGAACAAGAAACA
GGATGCGGAGGGCGGAGCCGAGTCGCAGCTAATCAGCGAGGGCAACGCCA
AGGGAGTCTCCATCAGGCAGAAGATCTCTGAGATGCCCTGCAGTTATAAT
CTGGCATGTAGGGTCCTTCCCGAGATCAGCATCACGCGGTGCCCCCAGTT
CGATCCGGCCGGCAACGGTGAGCAGTTGTGGGCACAGCTCAAGGAGCATG
GCCAGCTTAGCGAGCATCCCACCTCAGAGGCACTAAAAACCAAAGATATA
GGCGTGGCTGTCTGTGGCCAGGTGGCCCTGAAGCCAATGGCATCCCACGA
TCTGGAGTTTGTGCTGGCCTGGGATATGCCAAAGATTCAGTTCCCCAGGA
AGATGCAGACCCATACACGCTACTACACCAAGTACTTCGATGACAGCGGT
GATTCCGGTCCCAGGATCTGCGAGTATGCACTCAGGCAGTATTCCACCTG
GGAGCGATTGATTGATGCGTGGCAAAGACCCATTCTCAATGATGAAACCC
TTCCCGACTGGTACAAGTGTGCCATCTTCAATCAACTTTACTTCATCTCG
GATGGCGGAACCATTTGGTTGAAATGTGATTCTTCGCTGGGCAAGGAACT
GGCTTATGATGATCCCCGACTGGCTTATGGCCGTTTCGGTTACCTGGAAG
GCCACGAATACCGCATGTACAACACCTACGATGTCCATTTCTATGCATCG
CCGGCTCTGGCCCACCTGTGGCCCAATCTTCAGGTCAGTCTGCAGTATGA
CTTCAAGGATGCCATTGCCGCAGAACTAAACGATACTCGTAAAATGCTTT
ACGATGGCAAGGTGATGCCGCGCAAGGTCAAGAACTGTGTGCCCCACGAT
CTCGGGGATCCCGATGAGGAACCCTTCACCTTGATCAACTGCTACAACAT
ACACGATGTGAATGACTGGAAGGATCTCAATACGAAGTTTGTGCTGCAGG
TGTATCGGGACTACTATGTCCTCAATGAACTGGCCCAGGCCCAGTCGGAT
AATGCAAGCAAGTTCAGCTCCATCGAGTTTATCGATAAGGAGAGCCTTTA
TGAGCTGTACAGCCAGGACAACAAGCGCAAGAATTCAGCTGATGAAAAGC
AACAAAACCGTAAATCTGCATCGATGTACATCAACGAAACCAATGGAAAG
GTGTATCTAATGGATGCCATTGGCTACTTGAAGGCCATGTACGCATCGTG
CAAGGCCATTATGGAGCGAACCATTGAGTACGATAAGGACAACGACGGTC
TGATCGAGAACACAAAGATGCCGGACCAGACCTATGACTCCTGGGTGATG
GACGGACCGAGTGCCTACTGCTCCGGTCTCTGGCTGGCTGCTCTGCAAGC
CATGTCCGCCATGGCTACCATTCTGGACCAGCCGAACGATTGCCTGCGCT
ATCAGGATATTTTGGAGAAGGGCAAGCGATCGCTGGAGGAGAAGCTCTGG
AATGGCAGTTACTATCGCTTTGATCTTTCGCACAGTCATCGGGATACGAT
CATGGCCGATCAGTTATGTGGTCATTGGTATCTAAAGTCCTGCGGCTTCG
ATTACGAGATCTATCCGAAGGAGAATGTGCGTACTGCCCTTAAGAGGATC
TATGACAACAATGTGATGGGCTTTCATGAGGGCAATATCGGAGCGGCCAA
TGGCTTCATAGCCAATGCCAGCGAACCCACCAAGCCGGGTCACGTGGACA
ACAGCAACATCCAGGCGGAGGAGGTGTGGCCAGGAGTGGTTTACGCTCTG
GCTGCTACCATGATACAGGAGGGCATGTTCGAGGAAGCCTTCCAGACCGC
CGGCGGAATGTACAAGACCCTGTCCCAGCGCATCGGCATGAATTTCGAGA
CCCCGGAAGCGTTGTACGGTGAGAAGCGATATCGCTCCATTGGCTATATG
CGTCCGTTGAGCATTTGGTCCATGCAGGTGGCATTGGAGCGACGGCGAGC
CCAACGCGACTAAAAGCTTTCTAGACCAT
BS22516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33090-RB | 2847 | CG33090-PB | 1..2847 | 17..2863 | 14220 | 100 | Plus |
| CG33090-RD | 2841 | CG33090-PD | 1..2841 | 17..2863 | 14095 | 99.8 | Plus |
| CG33090-RC | 2400 | CG33090-PC | 83..2400 | 546..2863 | 11575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33090-RB | 3450 | CG33090-RB | 149..3000 | 12..2863 | 14230 | 99.9 | Plus |
| CG33090-RD | 3444 | CG33090-RD | 149..2994 | 12..2863 | 14105 | 99.7 | Plus |
| CG33090-RC | 3392 | CG33090-RC | 620..2937 | 546..2863 | 11575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14344481..14345340 | 2004..2863 | 4285 | 99.9 | Plus |
| 2L | 23513712 | 2L | 14342775..14343370 | 544..1139 | 2980 | 100 | Plus |
| 2L | 23513712 | 2L | 14343750..14344123 | 1396..1769 | 1870 | 100 | Plus |
| 2L | 23513712 | 2L | 14341305..14341576 | 275..546 | 1360 | 100 | Plus |
| 2L | 23513712 | 2L | 14334306..14334570 | 12..276 | 1310 | 99.6 | Plus |
| 2L | 23513712 | 2L | 14343437..14343692 | 1140..1395 | 1280 | 100 | Plus |
| 2L | 23513712 | 2L | 14344182..14344416 | 1769..2003 | 1175 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:22:30 has no hits.
BS22516.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:44 Download gff for
BS22516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33090-RB | 152..2996 | 17..2861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:01 Download gff for
BS22516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33090-RB | 154..2998 | 17..2861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:05 Download gff for
BS22516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33090-RB | 154..2998 | 17..2861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:05 Download gff for
BS22516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14334311..14334570 | 17..276 | 100 | -> | Plus |
| 2L | 14341307..14341576 | 277..546 | 100 | -> | Plus |
| 2L | 14342778..14343370 | 547..1139 | 100 | -> | Plus |
| 2L | 14343437..14343692 | 1140..1395 | 100 | -> | Plus |
| 2L | 14343750..14344123 | 1396..1769 | 100 | -> | Plus |
| 2L | 14344183..14344416 | 1770..2003 | 100 | -> | Plus |
| 2L | 14344481..14345338 | 2004..2861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:01 Download gff for
BS22516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14334311..14334570 | 17..276 | 100 | -> | Plus |
| arm_2L | 14341307..14341576 | 277..546 | 100 | -> | Plus |
| arm_2L | 14342778..14343370 | 547..1139 | 100 | -> | Plus |
| arm_2L | 14343437..14343692 | 1140..1395 | 100 | -> | Plus |
| arm_2L | 14343750..14344123 | 1396..1769 | 100 | -> | Plus |
| arm_2L | 14344183..14344416 | 1770..2003 | 100 | -> | Plus |
| arm_2L | 14344481..14345338 | 2004..2861 | 99 | | Plus |
BS22516.pep Sequence
Translation from 16 to 2862
> BS22516.pep
MAEPLAVETKPLSNGNANGNAVGIAESASAVFQEKLKLQQQEESNEIAAV
PKYGLKLKFDHVWPEKRIQNVRASIRQTLPMVPLVCRYAAYYWKVSREGR
RVYMDYYYMENGKQIYGVPIGGIGGGTIGRGYAGEFCRFQMRPGIYEYNV
VLANQFIVTIKDPKGCTIFQSLLSKCSTRDKTSDPDGDPDGERTKCQLPN
CSSRAKQPLSAWHSNIEDTRCSYTGLYPRSWTEYDLSHYGVRLTCRQVSP
VIPHEYRESSLPCAVFVWSVENVCDQERKVSITFTFKNGTGNKKQDAEGG
AESQLISEGNAKGVSIRQKISEMPCSYNLACRVLPEISITRCPQFDPAGN
GEQLWAQLKEHGQLSEHPTSEALKTKDIGVAVCGQVALKPMASHDLEFVL
AWDMPKIQFPRKMQTHTRYYTKYFDDSGDSGPRICEYALRQYSTWERLID
AWQRPILNDETLPDWYKCAIFNQLYFISDGGTIWLKCDSSLGKELAYDDP
RLAYGRFGYLEGHEYRMYNTYDVHFYASPALAHLWPNLQVSLQYDFKDAI
AAELNDTRKMLYDGKVMPRKVKNCVPHDLGDPDEEPFTLINCYNIHDVND
WKDLNTKFVLQVYRDYYVLNELAQAQSDNASKFSSIEFIDKESLYELYSQ
DNKRKNSADEKQQNRKSASMYINETNGKVYLMDAIGYLKAMYASCKAIME
RTIEYDKDNDGLIENTKMPDQTYDSWVMDGPSAYCSGLWLAALQAMSAMA
TILDQPNDCLRYQDILEKGKRSLEEKLWNGSYYRFDLSHSHRDTIMADQL
CGHWYLKSCGFDYEIYPKENVRTALKRIYDNNVMGFHEGNIGAANGFIAN
ASEPTKPGHVDNSNIQAEEVWPGVVYALAATMIQEGMFEEAFQTAGGMYK
TLSQRIGMNFETPEALYGEKRYRSIGYMRPLSIWSMQVALERRRAQRD*
BS22516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33090-PB | 948 | CG33090-PB | 1..948 | 1..948 | 5108 | 100 | Plus |
| CG33090-PD | 946 | CG33090-PD | 1..946 | 1..948 | 5086 | 99.8 | Plus |
| CG33090-PE | 923 | CG33090-PE | 1..923 | 1..948 | 4928 | 97.4 | Plus |
| CG33090-PC | 799 | CG33090-PC | 29..799 | 178..948 | 4175 | 100 | Plus |
