BS22517.complete Sequence
1016 bp assembled on 2011-01-25
GenBank Submission: KX800214
> BS22517.complete
GAAGTTATCAGTCGACATGTCGCAGGTATCAACCCTCATCGATGTGGACA
AGCCACTCTTCGATCTCAGCACCTTCGCTGGGCGCTTCCAGTACTTCGCC
TGGATGACGGACCCCCGCACCGTAGTCGTATCCAGCGATCGCCTGCTGGA
AGCCAAAGCAATGGTTGAACGCTACCGGAAAGGTGACCAATCCCCGCCGC
TGAAGCCGGAGGAGGTGCACTACAACATGAAGCTGTACAACTCAGCCTTT
CATCCGGATACCGGCGAGCTGCAGAACTTTTGCGGCCGCATGAGTTTTCA
GGTACCCGGAGGCATGTTGATCACCGGTGGCATGCTGGCCTTCTATCGCA
CCGTGCCCGCCGTGGTGCTCTGGCAGTTCATCAACCAGTCCTTCAATGCG
GTTGTTAACTACACGAATCGCAATGCCAACTCGCCAACTAGCGTTACGCA
GCTGGGCGTGGCCTATGTATCCGCCACGACATCGGCTCTGGTAGCTGCTA
TTGGATGCAAGAACTATTGGTCAAAGAAAGCGACTCCGCTGTTCCAAAGA
TTTGTGCCCTTCGCAGCTGTGGCGGCAGCCAACTTCGTGAACATTCCGCT
GATGCGACAAAATGAGATAATCAATGGCATAGAGGTGAAGAACGACGATG
GAGTGGTTGTGGGCCAGAGTAGATTGGCAGCCATCAAAGGAATCGGTGAG
GTGGTTGTGTCCAGGATTGCGATGGCGGCGCCCGGAATGCTGGTGCTGCC
ATTGATAATGGAGAGGCTGGAGAAACTGCCTGCCTACAGGCGCATCAAGT
GGATTAATGCTCCATTCCAGACCCTTTTGGTTGGGTGCTTCCTTTGCTTC
ATGGTGCCCACTGCCTGCGCCCTGTTCCCACAGCAGTGTTCCTTGGACAC
TTCGATTATGCGCACCTTCGAGCCCGAACTTTACGAGGACCTCGAGAAGA
AAACTCAGGGCAAAGTGCCCAAGCGTGTCTACTTCAACAAGGGTCTGTAA
AAGCTTTCTAGACCAT
BS22517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6812-RA | 984 | CG6812-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6812-RA | 2062 | CG6812-RA | 537..1520 | 17..1000 | 4920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19064840..19065383 | 297..840 | 2720 | 100 | Plus |
| 3L | 28110227 | 3L | 19064327..19064596 | 33..302 | 1350 | 100 | Plus |
| 3L | 28110227 | 3L | 19065450..19065609 | 841..1000 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:52:26 has no hits.
BS22517.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:36 Download gff for
BS22517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6812-RA | 530..1511 | 17..998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:32 Download gff for
BS22517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6812-RA | 537..1518 | 17..998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:51 Download gff for
BS22517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6812-RA | 537..1518 | 17..998 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:51 Download gff for
BS22517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19063701..19063716 | 17..32 | 100 | -> | Plus |
| 3L | 19064845..19065383 | 302..840 | 100 | -> | Plus |
| 3L | 19065450..19065607 | 841..998 | 100 | | Plus |
| 3L | 19064327..19064595 | 33..301 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:32 Download gff for
BS22517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19056801..19056816 | 17..32 | 100 | -> | Plus |
| arm_3L | 19057427..19057695 | 33..301 | 100 | -> | Plus |
| arm_3L | 19057945..19058483 | 302..840 | 100 | -> | Plus |
| arm_3L | 19058550..19058707 | 841..998 | 100 | | Plus |
BS22517.pep Sequence
Translation from 16 to 999
> BS22517.pep
MSQVSTLIDVDKPLFDLSTFAGRFQYFAWMTDPRTVVVSSDRLLEAKAMV
ERYRKGDQSPPLKPEEVHYNMKLYNSAFHPDTGELQNFCGRMSFQVPGGM
LITGGMLAFYRTVPAVVLWQFINQSFNAVVNYTNRNANSPTSVTQLGVAY
VSATTSALVAAIGCKNYWSKKATPLFQRFVPFAAVAAANFVNIPLMRQNE
IINGIEVKNDDGVVVGQSRLAAIKGIGEVVVSRIAMAAPGMLVLPLIMER
LEKLPAYRRIKWINAPFQTLLVGCFLCFMVPTACALFPQQCSLDTSIMRT
FEPELYEDLEKKTQGKVPKRVYFNKGL*
BS22517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6812-PA | 327 | CG6812-PA | 1..327 | 1..327 | 1695 | 100 | Plus |
| CG11739-PB | 321 | CG11739-PB | 7..321 | 8..327 | 641 | 43 | Plus |
| CG11739-PD | 321 | CG11739-PD | 7..321 | 8..327 | 641 | 43 | Plus |
| CG11739-PA | 321 | CG11739-PA | 7..321 | 8..327 | 641 | 43 | Plus |
| CG11739-PC | 321 | CG11739-PC | 7..321 | 8..327 | 641 | 43 | Plus |
