BS22519.complete Sequence
644 bp assembled on 2011-01-25
GenBank Submission: KX802598
> BS22519.complete
GAAGTTATCAGTCGACATGGATCTGCCAATTGGAAAGTTAAACGGACTGC
TAAAGATGCAAATATTCCTCCTGCAATTGTTGCTTTTCGTTTCGCCGGCA
TTGTTGCAGCAGCCACATGTCTTTTACCATCCAAGACAATTGTATTACGA
TTCACCGCGTCTTCGTCGCTTTGAGTATGGTGCCGCTGCCACGCCCATTG
TGGGCGGCTATAGTCCGGCTCCTCCGCCGGCGATTCACTTTCAGCAGCAG
ACGCCACACTTTCAGCTGATTAACTATCGGCCGAGTTATCAGCCCTTGGG
CTTGGATTACCAGCAGCAGCAGTTGCCCGCTCCTGCCGCACCCCCTCCGC
CCCTGTATCCGCAGCAGAGTGTCCAGTACCAGCAGCGGACCATCGCTCCA
CACGCCGATTTGGCCAAATATCGATATGAAGATTGCAGGAGCAGCAGCAG
CAGCAACCCTCACAGAATGTCCAAACGGAAAGACCCAGGAGGTACGCCAA
GGATCTGGACACGGATGTGGCCGAAACCAGAAGTCCAGCTGACCGAAGTG
CCAAGGAAACCAAGTACTTTCATGACATTTTCATGCGCTTTGATGCACCC
GATTCGCGGAGTCATGGCCACGTCCTGAAAGCTTTCTAGACCAT
BS22519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13305-RC | 612 | CG13305-PC | 1..612 | 17..628 | 3060 | 100 | Plus |
| CG13305-RB | 972 | CG13305-PB | 1..415 | 17..431 | 2075 | 100 | Plus |
| CG13305-RB | 972 | CG13305-PB | 640..839 | 430..629 | 1000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13305-RC | 1138 | CG13305-RC | 293..905 | 17..629 | 3065 | 100 | Plus |
| CG13305-RB | 1364 | CG13305-RB | 293..707 | 17..431 | 2075 | 100 | Plus |
| CG13305-RB | 1364 | CG13305-RB | 932..1131 | 430..629 | 1000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8646116..8646530 | 431..17 | 2075 | 100 | Minus |
| 3L | 28110227 | 3L | 8645749..8645891 | 572..430 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 8645232..8645288 | 629..573 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:52:51 has no hits.
BS22519.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:37 Download gff for
BS22519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13305-RC | 289..899 | 17..627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:41 Download gff for
BS22519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13305-RC | 293..903 | 17..627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:59 Download gff for
BS22519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13305-RC | 293..903 | 17..627 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:59 Download gff for
BS22519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8645749..8645889 | 432..572 | 100 | <- | Minus |
| 3L | 8645234..8645288 | 573..627 | 100 | <- | Minus |
| 3L | 8646116..8646530 | 17..431 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:41 Download gff for
BS22519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8638334..8638388 | 573..627 | 100 | <- | Minus |
| arm_3L | 8638849..8638989 | 432..572 | 100 | <- | Minus |
| arm_3L | 8639216..8639630 | 17..431 | 100 | | Minus |
BS22519.pep Sequence
Translation from 16 to 627
> BS22519.pep
MDLPIGKLNGLLKMQIFLLQLLLFVSPALLQQPHVFYHPRQLYYDSPRLR
RFEYGAAATPIVGGYSPAPPPAIHFQQQTPHFQLINYRPSYQPLGLDYQQ
QQLPAPAAPPPPLYPQQSVQYQQRTIAPHADLAKYRYEDCRSSSSSNPHR
MSKRKDPGGTPRIWTRMWPKPEVQLTEVPRKPSTFMTFSCALMHPIRGVM
ATS*
BS22519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13305-PC | 203 | CG13305-PC | 1..203 | 1..203 | 1100 | 100 | Plus |
| CG13305-PB | 323 | CG13305-PB | 1..138 | 1..138 | 743 | 100 | Plus |
