BS22520.complete Sequence
1796 bp assembled on 2011-02-18
GenBank Submission: KX800687
> BS22520.complete
GAAGTTATCAGTCGACATGTTCAAGATTAGGCAGCGGAACTGCATGCTGA
TAGTGACGGCCCTGGTGCTGGCACCATGCATAGTGATCCTGATGGTGATG
GGACCCGAGTTATCCACCGAACAGTCGCTGACTCAGCGCCTAGCCGAATG
CCATATGCGGCTGCAGTATTTGGAGTCCATGTACCGCGCTCGCCAGGAGG
ACGTGGCGCTGCTTTCCCAGTACCTGGGCCAATTGCAGATCGTCAATGTG
ACGGGAGCCAGTGCACCACCGCCGCCGCCACCTTTGCCCGTGGTTAATCT
GCTCGACGGGCTGAGTCCCGAGGCTAGGCAACTGCTGAGAAATGCGTCGC
ATATCAGTAAGGGTGGCAGTGCAAATGGCTCGATGGCCAGGAGCCAGAAT
ATACGGCTACCGAATGCTTATCATTTCCTGCCGCATCTTCTGGACGATGC
CGGCTCCCTGCGACCAGCATACTTGCAAAGCAAGGGCCGTTCGGATGTGA
GCATTGTCCTGGGTGTGCCCACCGTGCGGAGGGAGAAGCAATCGTACCTC
CTTGGAACCCTCCACAATCTCATCGAGAACATGAACGACGAGGAGCAGAA
CGAAACACTGATCATAGTCTATATAGGAGAAACGGATATGGAGTCCGTGC
AACTTATTGCCCGTCAAATCGAGTCAAGTTTCGATCAGCATGTGGAGAGT
GGACTGATTGATATAATAGCACCTGCACCTAGTTACTATCCGAATTTCGA
ACGACTTCGCATCACACTGAATGATCCTTTGGAGCGCGTTAAATGGCGCA
GTAAGCAGAATTTGGACTTTGCCTACCTGATGGCCTACGCCCATTCAAAG
GGAACCTTTTACGTTCAACTGGAGGACGATATACTGACCAAGCGGCAGTT
CATAACCACCATGAAGAAATTCGCCCTTATCAAGAGCGCTTTGACGAAAC
CCGATCAACCAGAATGGTTTGTGCTAGACTTTTGCCAGCTTGGCTTTATT
GGCAAGATGTTCAAGAGTGCGGAACTACCCTACCTGATCACCTATTTCCA
AATGTTCTATAATGACAAGCCAGTGGACTGGTTACTTACGTATTTTATCG
AGTCCAAGGTTTGTCGCACGGACAAGGATCAAAAGCACTGCAATGCGGAG
AAGGCAAAGTACTGGCAGCATTTTCGAAAATCCCTTTTCCAACACATTGG
TACAAGTTCGTCGCTGAAAGGAAAAGTTCAAAAGCTGAAGGACAAGCAGT
TCGGCAGTAAGGTGCCGCAGTATTATGCCCATACACACAATCCACCGGCT
CTGGTGAAGTCCAACATTGCGCCGTATAAAAACTATCTGTTGCAGCGCGC
CTACAGAGGAGAATCCTACTTCTGGGGCTTGCTACCGCAGCCTGGAGATC
TGGTGCAGATCATATTCGAGCGACCCACGCAGCTGAGGCACTACCTCTTC
CGAAGCGGCAACTCGGAGCACCCGTCCGACAGGTTCTACAACACAACGGT
GGAGCTCCTGCCGGCGGATACGCTTAGCGAAAATTCGTCCGTTTGGAGCA
GCTACAACACCACTACGGACGGCTATTTGGTGGTGGGTTCATTTGATAGC
ATGGGCGTGGCGGAGGGCCTTCTGGATGCCAAGATAGGTGCTATCAAGGA
GCTGCGCCTTCACGTCCACAGTGACAGCGAGAATTGGGCCCTGCTCAGCG
AGATCGAACTACAGGAATGGGGCAGTGATTCCAAATCCGAGGACAATGCC
GCAAAGCCACGGTATGTGGGGGGCAGCTGAAAGCTTTCTAGACCAT
BS22520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9384-RB | 1764 | CG9384-PB | 1..1764 | 17..1780 | 8805 | 99.9 | Plus |
| CG9384-RA | 1764 | CG9384-PA | 1..1764 | 17..1780 | 8805 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9384-RB | 4612 | CG9384-RB | 849..2612 | 17..1780 | 8805 | 99.9 | Plus |
| CG9384-RA | 4440 | CG9384-RA | 677..2440 | 17..1780 | 8805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14763940..14765703 | 17..1780 | 8805 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:23:08 has no hits.
BS22520.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:45 Download gff for
BS22520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9384-RA | 665..2422 | 22..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:09 Download gff for
BS22520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9384-RA | 682..2439 | 22..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:19 Download gff for
BS22520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9384-RA | 682..2439 | 22..1779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:19 Download gff for
BS22520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14763945..14765702 | 22..1779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:09 Download gff for
BS22520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14757045..14758802 | 22..1779 | 99 | | Plus |
BS22520.pep Sequence
Translation from 16 to 1779
> BS22520.pep
MFKIRQRNCMLIVTALVLAPCIVILMVMGPELSTEQSLTQRLAECHMRLQ
YLESMYRARQEDVALLSQYLGQLQIVNVTGASAPPPPPPLPVVNLLDGLS
PEARQLLRNASHISKGGSANGSMARSQNIRLPNAYHFLPHLLDDAGSLRP
AYLQSKGRSDVSIVLGVPTVRREKQSYLLGTLHNLIENMNDEEQNETLII
VYIGETDMESVQLIARQIESSFDQHVESGLIDIIAPAPSYYPNFERLRIT
LNDPLERVKWRSKQNLDFAYLMAYAHSKGTFYVQLEDDILTKRQFITTMK
KFALIKSALTKPDQPEWFVLDFCQLGFIGKMFKSAELPYLITYFQMFYND
KPVDWLLTYFIESKVCRTDKDQKHCNAEKAKYWQHFRKSLFQHIGTSSSL
KGKVQKLKDKQFGSKVPQYYAHTHNPPALVKSNIAPYKNYLLQRAYRGES
YFWGLLPQPGDLVQIIFERPTQLRHYLFRSGNSEHPSDRFYNTTVELLPA
DTLSENSSVWSSYNTTTDGYLVVGSFDSMGVAEGLLDAKIGAIKELRLHV
HSDSENWALLSEIELQEWGSDSKSEDNAAKPRYVGGS*
BS22520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9384-PB | 587 | CG9384-PB | 1..587 | 1..587 | 3064 | 100 | Plus |
| CG9384-PA | 587 | CG9384-PA | 1..587 | 1..587 | 3064 | 100 | Plus |
| CG17173-PA | 508 | CG17173-PA | 72..453 | 148..534 | 645 | 35.6 | Plus |
