BS22522.complete Sequence
1574 bp assembled on 2011-01-25
GenBank Submission: KX803837
> BS22522.complete
GAAGTTATCAGTCGACATGTGCTGCAGCTGCTGTGGGGTGACCCAACAAA
AGGCCTGGGTCTTCGGCCTGGGAACCTTTTTCGCGGTCTCCGGACTCCTG
GCCATAATATGCTGGCCTGGCTTTATAGACTCAGGGATTATGAAGGCCTT
GCCGTTGACACCCACTTCAAAGACTTTTGAAAAATGGGAGGAGCTGCCCA
TTCCGGTGTATGTCTACATGTATCTTTGGAACTGGACAAATGCCGCAGAT
GTGCAGGCTAATGGAGTAAAACCTATTTTCGCGCAACTTGGACCCTATGT
TTATCGAGAGGAGAGGAAGAAGATGGATCTTGAGTGGCACGACAATGGCA
CAGTTACCTTTAACCCCAGAAGAACTTGGTTCTGGGAAGAGGAGCTCTCT
GGCGGCAAGCAAACGGATTTAATTACCGCCCCACATTTACCTTCATTGGC
TGCTTCAAACCAAATGCGGAATAGCAACGTCTTCCTGAAATTCATGTTCA
ACGAGGCCCTAAATGCGAATGGTGGACATCTCTTTGTGACCCACACGGCA
GCTGAATGGCTGTTCGAAAGTTTCTACGACGAATTTTTGCATTACGCCAT
GACCCTGAATAATCCATTGGTCCCAAAAATCGAGTCGGATCACTTTGCCT
GGTTCCTCAACCGTAACGGATCGAAGGACTTCGAGGGTCCCTTCACTGTA
CACACCGGAGTGGGTGACATCAAGGAGATGGGTGAAATTAAGTATTGGAA
GGGCCAGAATCACACGGGATGGTACGATGGAGAATGTGGACGTCTCAATG
GCAGCACCACGGATCTTTTTGTGCCCGATGAGCCCAAGGAGAAGGCTTTG
ACCATCTTCATTCCGGATACTTGTCGGATCATAAATCTTGAGTTCACCGG
ACAGAGCGAAACAATTCAGGGCATCACGGGTTGGAAGTACGAGATAACGC
CGAATACCTTCGACAATGGACAGATCAATGGTAACGCGAAGTGCTGGTGT
CCTTTGGAGCGCCAGCCAGATAATTGTCCTGCAACCGGAGCCACTGACCT
AGGACCGTGTGCCGATGGAGTTCCCATGTACCTTTCTGCGGATCATTTTA
TGTACGCGGACGAAAGTTATGGCAGCACGATAAGCGGCTACAATCCGAAT
TACGATCAAAATAACTTTTATATCATCATGGAGCGCAAGATGGGAGTGCC
GTTGAAGGTCAATGCCAATGTGATGATTACCTTGTACATAGAGCCAGACA
GCGTTATAGACATACTGAAGGGCCTGCCCAGCTTCTATGCACCACTTTTT
ACCACTGCTAGTCGAGCGGAAATCGACGAAGCCCTCGCCTCAGAACTTAG
GTTGGCACTGAATCTACCGGCTATAGGGAGATATACTGGAGTGGGATTCC
TGTGCCTGGGCTGCATTCTTATAGCAGTTGGCATCTTACTTACCATTAAG
AGGAAGTGGTATGGCCAGGCCGAGTTGGACAAACTGGCTCTCAAGGATAA
CGAGGAAACTCCATATGAACCGGAAGTTCCGGCCAACGTGGTCGAACGAA
ACTTTTAAAAGCTTTCTAGACCAT
BS22522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaD-RA | 1542 | CG31783-PA | 1..1542 | 17..1558 | 7710 | 100 | Plus |
| ninaD-RB | 1248 | CG31783-PB | 1..1244 | 17..1260 | 6220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaD-RA | 1727 | CG31783-RA | 38..1579 | 17..1558 | 7710 | 100 | Plus |
| ninaD-RB | 1342 | CG31783-RB | 38..1281 | 17..1260 | 6220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18082223..18083035 | 448..1260 | 4065 | 100 | Plus |
| 2L | 23513712 | 2L | 18081850..18082156 | 143..449 | 1535 | 100 | Plus |
| 2L | 23513712 | 2L | 18083253..18083460 | 1351..1558 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 18081665..18081794 | 17..146 | 650 | 100 | Plus |
| 2L | 23513712 | 2L | 18083099..18083189 | 1261..1351 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:51:48 has no hits.
BS22522.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:34 Download gff for
BS22522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaD-RA | 36..1575 | 17..1556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:19 Download gff for
BS22522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaD-RA | 38..1577 | 17..1556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:42 Download gff for
BS22522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaD-RA | 38..1577 | 17..1556 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:42 Download gff for
BS22522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18081665..18081793 | 17..145 | 100 | -> | Plus |
| 2L | 18081853..18082155 | 146..448 | 100 | -> | Plus |
| 2L | 18082224..18083035 | 449..1260 | 100 | -> | Plus |
| 2L | 18083099..18083189 | 1261..1351 | 100 | -> | Plus |
| 2L | 18083254..18083458 | 1352..1556 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:19 Download gff for
BS22522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18081665..18081793 | 17..145 | 100 | -> | Plus |
| arm_2L | 18081853..18082155 | 146..448 | 100 | -> | Plus |
| arm_2L | 18082224..18083035 | 449..1260 | 100 | -> | Plus |
| arm_2L | 18083099..18083189 | 1261..1351 | 100 | -> | Plus |
| arm_2L | 18083254..18083458 | 1352..1556 | 100 | | Plus |
BS22522.pep Sequence
Translation from 16 to 1557
> BS22522.pep
MCCSCCGVTQQKAWVFGLGTFFAVSGLLAIICWPGFIDSGIMKALPLTPT
SKTFEKWEELPIPVYVYMYLWNWTNAADVQANGVKPIFAQLGPYVYREER
KKMDLEWHDNGTVTFNPRRTWFWEEELSGGKQTDLITAPHLPSLAASNQM
RNSNVFLKFMFNEALNANGGHLFVTHTAAEWLFESFYDEFLHYAMTLNNP
LVPKIESDHFAWFLNRNGSKDFEGPFTVHTGVGDIKEMGEIKYWKGQNHT
GWYDGECGRLNGSTTDLFVPDEPKEKALTIFIPDTCRIINLEFTGQSETI
QGITGWKYEITPNTFDNGQINGNAKCWCPLERQPDNCPATGATDLGPCAD
GVPMYLSADHFMYADESYGSTISGYNPNYDQNNFYIIMERKMGVPLKVNA
NVMITLYIEPDSVIDILKGLPSFYAPLFTTASRAEIDEALASELRLALNL
PAIGRYTGVGFLCLGCILIAVGILLTIKRKWYGQAELDKLALKDNEETPY
EPEVPANVVERNF*
BS22522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaD-PA | 513 | CG31783-PA | 1..513 | 1..513 | 2807 | 100 | Plus |
| ninaD-PB | 415 | CG31783-PB | 1..415 | 1..415 | 2303 | 99.8 | Plus |
| CG31741-PA | 491 | CG31741-PA | 1..484 | 1..489 | 1058 | 41.2 | Plus |
| crq-PC | 491 | CG4280-PC | 1..486 | 1..489 | 990 | 37.4 | Plus |
| crq-PE | 491 | CG4280-PE | 1..486 | 1..489 | 990 | 37.4 | Plus |
