BS22523.complete Sequence
1118 bp assembled on 2011-01-25
GenBank Submission: KX802087
> BS22523.complete
GAAGTTATCAGTCGACATGGATCCGATGATTTGTGATCTGTGGTCTGGCC
GCATTTGGCTATTGATACTCATTTGCCTGTGCGGCTTTCAGCAGTCCCGC
TGTTTTTTTGTTGACTATACAGAGAACACAGAGTTAATTCAACAGAGAGC
CGGATTCGATGTCAAGCTGCAGTGCAATCTCAAAGGTCTGGTCGATGAGA
GTATGCTGAATGACATCAAGATACATTGGTACTTTAAGCAATGCAGCGAA
AACAATTGCCATCAGTTGGGATCTGTGGACGAGTGGACTGCTCTGCCATG
TGAGCCGAGTCTTTGTCGTCCGGAACTCTGGCTCCGGAATGTGACGGAGC
GGTATTCGGGACTGTACAAATGCAGCATTAATCCGCACATTTGGGATAAA
GCCCAGGCTGTGGATGTTCAACTGGTTCGCACCTATCAGCTGGATGTTAA
AAACACCTCATTGGCAGCCCCTGAGTTTGTGGACTCGTATCCCAACAACA
AGACCACATTGGTGGGCAGTAGGGTGGTGTTCCAGTGCCGTGTTCACAGC
GAGGAGCATCCCACAATCAAGTGGTTTCGCCGGCAGACGTACGTGGGAAC
TCAGTCAGGTGGCGAAGCCTCCTCGGCACCCACAACCTCAAATTTTAGCA
ACCATATTGTCCGGTACAATGGTCGAACATATGAACTACTGTCCACCGAT
CCAGAAAAGATGATGGCACCCCAGATATATCTCAGCAAATTGATTCTGGA
CGGAGTGAGATTACGAGATGCCGGACACTACGCCTGCGTGGCCATCAGCT
ATCGAGGCCATAAGATCCGCGAGGCTTTCCTGGATGTGCTGGCCGATGTG
GAGGATACGGATCAGGAGAATGAGTACTGGTCGGACTACGGTAATGAAGA
TGAGGGAGTTCCGACTAGCGATCGACGGGAGTTCCTGCTGCTCTTCCTTA
TGCCACTGGGATTGGCTCTTCTTCCATTGACCGTGTGGTTCAGTTATCTG
TTGTACAAACGTTGCTCTGTGGGACACGGCGATTGCCAGCGAATAGATTC
GGACGAGGATCTGGACACGGAAAGGTGTGTCCTCGGGGGAAACAAGCATT
AAAAGCTTTCTAGACCAT
BS22523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31431-RC | 1086 | CG31431-PC | 1..1086 | 17..1102 | 5430 | 100 | Plus |
| CG31431-RB | 1086 | CG31431-PB | 1..1086 | 17..1102 | 5430 | 100 | Plus |
| CG31431-RA | 1086 | CG31431-PA | 1..1086 | 17..1102 | 5430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31431-RC | 1595 | CG31431-RC | 384..1478 | 10..1104 | 5445 | 99.8 | Plus |
| CG31431-RB | 1685 | CG31431-RB | 480..1574 | 10..1104 | 5445 | 99.8 | Plus |
| CG31431-RA | 1585 | CG31431-RA | 374..1468 | 10..1104 | 5445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21872872..21873523 | 453..1104 | 3260 | 100 | Plus |
| 3R | 32079331 | 3R | 21872582..21872801 | 233..452 | 1085 | 99.5 | Plus |
| 3R | 32079331 | 3R | 21872407..21872525 | 120..238 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 21872028..21872140 | 10..122 | 535 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:51:56 has no hits.
BS22523.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:35 Download gff for
BS22523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31431-RA | 378..1461 | 17..1100 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:22 Download gff for
BS22523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31431-RA | 381..1464 | 17..1100 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:44 Download gff for
BS22523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31431-RA | 381..1464 | 17..1100 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:44 Download gff for
BS22523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21872588..21872801 | 239..452 | 100 | -> | Plus |
| 3R | 21872035..21872140 | 17..122 | 100 | -> | Plus |
| 3R | 21872410..21872525 | 123..238 | 100 | -> | Plus |
| 3R | 21872872..21873519 | 453..1100 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:22 Download gff for
BS22523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17697757..17697862 | 17..122 | 100 | -> | Plus |
| arm_3R | 17698132..17698247 | 123..238 | 100 | -> | Plus |
| arm_3R | 17698310..17698523 | 239..452 | 100 | -> | Plus |
| arm_3R | 17698594..17699241 | 453..1100 | 100 | | Plus |
BS22523.pep Sequence
Translation from 16 to 1101
> BS22523.pep
MDPMICDLWSGRIWLLILICLCGFQQSRCFFVDYTENTELIQQRAGFDVK
LQCNLKGLVDESMLNDIKIHWYFKQCSENNCHQLGSVDEWTALPCEPSLC
RPELWLRNVTERYSGLYKCSINPHIWDKAQAVDVQLVRTYQLDVKNTSLA
APEFVDSYPNNKTTLVGSRVVFQCRVHSEEHPTIKWFRRQTYVGTQSGGE
ASSAPTTSNFSNHIVRYNGRTYELLSTDPEKMMAPQIYLSKLILDGVRLR
DAGHYACVAISYRGHKIREAFLDVLADVEDTDQENEYWSDYGNEDEGVPT
SDRREFLLLFLMPLGLALLPLTVWFSYLLYKRCSVGHGDCQRIDSDEDLD
TERCVLGGNKH*
BS22523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31431-PC | 361 | CG31431-PC | 1..361 | 1..361 | 1964 | 100 | Plus |
| CG31431-PB | 361 | CG31431-PB | 1..361 | 1..361 | 1964 | 100 | Plus |
| CG31431-PA | 361 | CG31431-PA | 1..361 | 1..361 | 1964 | 100 | Plus |
