BS22524.complete Sequence
2477 bp assembled on 2011-02-18
GenBank Submission: KX805166
> BS22524.complete
GAAGTTATCAGTCGACATGGCTGATCATGCTTTTCATCGGCCCGGGCCGC
TGAAACAAGCGAACAAGGCTCACAAAACGGGTCGTCATCGCTCCAAAGGA
GCAATAGACAATGCCCAAAAAGGGAAGATTGGACTGAGGCCTATCTCCCA
CAAGCACAAGCAGCAGCAGCGCAAGGAGCAGCGTCGCAACCAGATGAACC
AGCTCAGGAAAAACAAAAGGGAGGAGGTGTTGGAGCAAAAGAGAAAACTA
GGTGGTCAGAACACAGCTCCCTTTCTTGTGTGCCTACTACCCATGCACGA
ACAGATTGATCCCATGTCCGCATTGGAAATCCTAAAGAGCTGTGACAGCG
AACTGGTCGTGGAGAACTCCCCAAGTGGCATTGTTTACATCAATCTTCCA
AGGTTCAAGCAGCGTTTCGCTTTTGTCACACCACCAGTGGGACGCGGAAA
TGAGCTAATTGCCCTGGATTACCTTAAGGTTTGCGACACCACCCTGCTTT
TGACCACCGCAGCCTTTGGCGATGACGAGATCTTCGACCGCTGGGGTCAA
CGGATCTTTAACATGATGTCAGCCCAGGGAATACCCACTCCGGTAGTAGC
CCTCATGGATCTGGAGTCAATCAATCCCAAGCGTCGTCCTGCTGCCAAGC
AGGCGGCTCAGAAGGTCATATCTAAGCTGTTGCCCGAGGAGAAGATCATG
CAATTGGACACCGCTAGCGAGGCCTTGAATGTTATGCGGCGCATTGGAGG
CCAGAAGAAGCGCATCCTCCATAACGTCGCCAATCGGCCACATCTCTTTG
GAGATGTGGTAGAGTTTAAACCGGGCTCAGATCCCAGCGACGATCTGGGC
ACACTAGAAGTTACTGGTTTCTTACGTGGACAGTCTCTTAACGTGAATGG
TTTGGTCCACATTCCCGGCTTGGGTGATTTCCAGCTAAGCCAGGTGGTGG
CCCCTCCAGATCCGTATAAGCTAGATAAATCGCGCGATGGAGAGAATAGT
GAGGTGCGTCTCTTGGATCGCAGTGATCCCTCTAAGCGCACTTCCCTTCA
AAGCGAAAACATACCCGACCCCATGGACGCGGAGCAGACGTGGCCCACCG
AAGACGAGATTGCCGCATCGCAGGCGGAAACTAAAAAGATGAAGCTTGTT
AAGCGTGTACCCAAGGGCTACAGCGAGTACCAGGCTGCCTGGATTCCGGA
TGTGGAGGAAGTGGAAGACCCAGACGGTAAGGATGACGATGACATGAGTG
AAGATGATGATGACGACAAAGAAGACGATAATGAGGACTTCATGTCGTGC
GACAACAAATCCTTTGAGGATGAGTACGAGAAGCGGGACTCAGACACTGA
GGAGTTCCAGGACACCGTGTCCGTGGCCTCGGAGGCTGCCATCAACGACG
AAAAGTACGATCAGCAAATGGACTTCCAGGAGGAGCGTGAGACCCTGAAG
AAGCTGCAGCAAGCACGCACGGATCAGCTTTGGCCCGATGAGATAGACAC
TCCTTTGGATGTGCCCGCTCGCGAGAGGTTCCAGAAATATCGCGGCTTAG
AGTCCTTCCGAACTTCGCCTTGGGATGCCAAGGAGAATCTTCCCGCTGAC
TATGCTCGCATCTATCAGTTCCAGAACTTCGACCGCACCAAGCGTAGGAT
TCTTAATGAAGCCAAGGAGTTCGAGGGCGTTCTGCCTGGTTTATACGTCA
CTCTTTATGTGATAAATGTTCCTGAGAGCCGCTGGAATGCCTTCAAGTCC
GCCCAGCTTATGGACAACATTATTGTATATGGAATGCTACCCCATGAGCA
CCAGATGTGCGTAATGAACGTGGTACTGCAGCGAATGCCCGACTCGGAGG
TGCCGCTGAAGTCTAAAGAACAATTGATAATCCAGTGCGGCTATCGTCGC
TTTGTTGTGAATCCCATTTACAGTCAGCACACCAATGGGGATAAGCATAA
GTTCGAACGCTACTTCCGTCCGTACGAAACAGTTTGCGCCACGTTTTACG
CACCGATTCAGTTCCCTCCGGCACCCGTGCTGGCCTTCAAGGTGAATCCC
GACTCCACCCTGGCGCTGGTTGCCCGTGGACGCCTGCTGTCCTGCAATCC
AGATCGTATTGTTCTCAAGCGCGTTGTTCTCAGCGGTCATCCCATGCGTA
TCAATCGCAAGTCGGCTTCTATTCGCTACATGTTCTTCTACAAGGAGGAT
GTGGAGTACTTCAAGCCTGTGAAACTAAGAACCAAGTGCGGACGGCTGGG
ACACATTAAGGAGTCACTGGGCACGCACGGCCACATGAAGTGCTACTTTG
ATGGGCAGTTGCGATCCTACGACACTGCTTTCATGTACCTGTACAAGAGA
GTCTTCCCCAAATGGACCTACGAAGAGTGTCTGGTGCGAACGGCGGAGCA
CGAGCGACAACATGCGTCGGCAAACAGGAGGAGCTCGCAGCAAGTGGCCA
TGGAAGAGTAGAAGCTTTCTAGACCAT
BS22524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7338-RA | 2445 | CG7338-PA | 1..2445 | 17..2461 | 12225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7338-RA | 2844 | CG7338-RA | 109..2554 | 17..2462 | 12230 | 100 | Plus |
| CG7324-RB | 4540 | CG7324-RB | 4279..4540 | 2462..2201 | 1310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21335491..21337054 | 121..1684 | 7820 | 100 | Plus |
| 3L | 28110227 | 3L | 21337430..21337942 | 1950..2462 | 2565 | 100 | Plus |
| 3L | 28110227 | 3L | 21337104..21337375 | 1680..1951 | 1345 | 99.6 | Plus |
| 3L | 28110227 | 3L | 21335323..21335429 | 17..123 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:43:37 has no hits.
BS22524.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:38:02 Download gff for
BS22524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7338-RA | 106..2550 | 17..2461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:59 Download gff for
BS22524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7338-RA | 109..2553 | 17..2461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:50 Download gff for
BS22524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7338-RA | 109..2553 | 17..2461 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:50 Download gff for
BS22524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21335323..21335428 | 17..122 | 100 | -> | Plus |
| 3L | 21335493..21337054 | 123..1684 | 100 | -> | Plus |
| 3L | 21337109..21337375 | 1685..1951 | 100 | -> | Plus |
| 3L | 21337432..21337941 | 1952..2461 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:59 Download gff for
BS22524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21328423..21328528 | 17..122 | 100 | -> | Plus |
| arm_3L | 21328593..21330154 | 123..1684 | 100 | -> | Plus |
| arm_3L | 21330209..21330475 | 1685..1951 | 100 | -> | Plus |
| arm_3L | 21330532..21331041 | 1952..2461 | 100 | | Plus |
BS22524.pep Sequence
Translation from 16 to 2460
> BS22524.pep
MADHAFHRPGPLKQANKAHKTGRHRSKGAIDNAQKGKIGLRPISHKHKQQ
QRKEQRRNQMNQLRKNKREEVLEQKRKLGGQNTAPFLVCLLPMHEQIDPM
SALEILKSCDSELVVENSPSGIVYINLPRFKQRFAFVTPPVGRGNELIAL
DYLKVCDTTLLLTTAAFGDDEIFDRWGQRIFNMMSAQGIPTPVVALMDLE
SINPKRRPAAKQAAQKVISKLLPEEKIMQLDTASEALNVMRRIGGQKKRI
LHNVANRPHLFGDVVEFKPGSDPSDDLGTLEVTGFLRGQSLNVNGLVHIP
GLGDFQLSQVVAPPDPYKLDKSRDGENSEVRLLDRSDPSKRTSLQSENIP
DPMDAEQTWPTEDEIAASQAETKKMKLVKRVPKGYSEYQAAWIPDVEEVE
DPDGKDDDDMSEDDDDDKEDDNEDFMSCDNKSFEDEYEKRDSDTEEFQDT
VSVASEAAINDEKYDQQMDFQEERETLKKLQQARTDQLWPDEIDTPLDVP
ARERFQKYRGLESFRTSPWDAKENLPADYARIYQFQNFDRTKRRILNEAK
EFEGVLPGLYVTLYVINVPESRWNAFKSAQLMDNIIVYGMLPHEHQMCVM
NVVLQRMPDSEVPLKSKEQLIIQCGYRRFVVNPIYSQHTNGDKHKFERYF
RPYETVCATFYAPIQFPPAPVLAFKVNPDSTLALVARGRLLSCNPDRIVL
KRVVLSGHPMRINRKSASIRYMFFYKEDVEYFKPVKLRTKCGRLGHIKES
LGTHGHMKCYFDGQLRSYDTAFMYLYKRVFPKWTYEECLVRTAEHERQHA
SANRRSSQQVAMEE*
BS22524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7338-PA | 814 | CG7338-PA | 1..814 | 1..814 | 4288 | 100 | Plus |
| CG7728-PA | 1159 | CG7728-PA | 761..994 | 551..779 | 178 | 25.7 | Plus |
