BS22525.complete Sequence
1370 bp assembled on 2011-01-25
GenBank Submission: KX803173
> BS22525.complete
GAAGTTATCAGTCGACATGGGCAGCGCGCTGGAAAACTATGTGAATCAAG
TGCGCACACTGAGTGCGTCCGGAAGCTATCGGGAGCTGGCCGAGGAGCTG
CCGGAGTCGCTGTCGCTGCTAGCCCGCAACTGGAGCATTCTGGACAACGT
GCTGGAGACGCTAGACATGCAGCAGCACTCGCTGGGCGTGCTCTATGTGC
TCCTGGCCAAACTGCACAGTGCGTCCACCGCGAATCCGGAGCCGGTACAA
CTTATCCAGCTGATGCGGGACTTTGTGCAGCGCAACAATAACGAGCAGCT
GCGCTATGCGGTGTGCGCCTTTTACGAAACATGCCATCTGTTTACCGAGT
TTGTGGTGCAAAAGAACCTCAGCATCCTGGGCATACGCATCATTTCGCGC
GCCATCGACCAGATTCGACAGTTGGAAACCCAGTTAACTCCCATACACGC
CGATCTCTGCCTGCTCAGCCTGAAGGCGAAAAACTTCAGTGTGGTGCTGC
CGTATCTGGACGCGGACATCACGGACATCTCCACCGTGGCAGCCGAGTGC
AAGACGCAACAGCAGCAGCAGTCCCAGCACGCGGATGCCAACAACGATGC
CAAGTACTTCTTGCTGTACTTCTACTACGGCGGCATGATCTACACGGCGG
TGAAGAACTACGAGCGTGCGTTGTACTTCTTCGAAGTCTGCATCACCACT
CCGGCAATGGCCATGTCGCACATCATGCTGGAGGCCTACAAAAAATTTCT
CATGGTTTCACTCATCGTCGAAGGCAAGATAGCGTATATACCAAAAAACA
CACAGGTCATTGGTCGTTTTATGAAGCCGATGGCCAATCACTACCACGAC
CTGGTCAATGTGTACGCGAATTCGTCTAGCGAAGAGCTGCGCATTATCAT
ACTCAAGTACAGTGAAGCATTTACGCGTGATAACAATATGGGACTGGCCA
AGCAGGTGGCTACCTCCTTGTACAAGCGAAACATCCAGCGGCTCACTAAA
ACCTTCTTGACCCTTTCCCTGAGCGATGTGGCCAGTCGTGTCCAACTTGC
CAGCGCAGTCGAAGCAGAGCGTTACATTCTCAACATGATAAAATCGGGTG
AAATATATGCCAGCATCAATCAAAAGGACGGTATGGTGTTGTTCAAAGAC
GACCCAGAGAAATACAACTCACCGGAGATGTTCCTCAACGTGCAAAATAA
TATAACACACGTTCTGGATCAAGTTAGGCAGATCAACAAAATGGAGGAGG
AGATCATTTTAAATCCAATGTATGTGAAAAAGGCTCTTGGCAGCCAGGAT
GATGACCTAACGTCGCAGCACCCAAAGACTTTCTCGGGTGATCCCACAGA
TTGAAAGCTTTCTAGACCAT
BS22525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN3-RA | 1338 | CG18332-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN3-RA | 1679 | CG18332-RA | 113..1450 | 17..1354 | 6690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20840725..20840988 | 584..321 | 1320 | 100 | Minus |
| 3L | 28110227 | 3L | 20841048..20841297 | 320..71 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 20840473..20840668 | 778..583 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 20839524..20839707 | 1270..1087 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20840224..20840403 | 956..777 | 900 | 100 | Minus |
| 3L | 28110227 | 3L | 20839762..20839899 | 1091..954 | 675 | 99.3 | Minus |
| 3L | 28110227 | 3L | 20839398..20839466 | 1338..1270 | 345 | 100 | Minus |
| 3L | 28110227 | 3L | 20841409..20841464 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:11 has no hits.
BS22525.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:38 Download gff for
BS22525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN3-RA | 112..1448 | 17..1353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:50 Download gff for
BS22525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN3-RA | 113..1449 | 17..1353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:06 Download gff for
BS22525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN3-RA | 113..1449 | 17..1353 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:06 Download gff for
BS22525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20840473..20840667 | 584..778 | 100 | <- | Minus |
| 3L | 20839398..20839465 | 1271..1338 | 100 | <- | Minus |
| 3L | 20839524..20839706 | 1088..1270 | 100 | <- | Minus |
| 3L | 20839766..20839897 | 956..1087 | 100 | <- | Minus |
| 3L | 20840225..20840401 | 779..955 | 100 | <- | Minus |
| 3L | 20840726..20840988 | 321..583 | 100 | <- | Minus |
| 3L | 20841048..20841296 | 72..320 | 100 | <- | Minus |
| 3L | 20841410..20841464 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:50 Download gff for
BS22525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20832624..20832806 | 1088..1270 | 100 | <- | Minus |
| arm_3L | 20832866..20832997 | 956..1087 | 100 | <- | Minus |
| arm_3L | 20833325..20833501 | 779..955 | 100 | <- | Minus |
| arm_3L | 20832498..20832565 | 1271..1338 | 100 | <- | Minus |
| arm_3L | 20833573..20833767 | 584..778 | 100 | <- | Minus |
| arm_3L | 20833826..20834088 | 321..583 | 100 | <- | Minus |
| arm_3L | 20834148..20834396 | 72..320 | 100 | <- | Minus |
| arm_3L | 20834510..20834564 | 17..71 | 100 | | Minus |
BS22525.pep Sequence
Translation from 16 to 1353
> BS22525.pep
MGSALENYVNQVRTLSASGSYRELAEELPESLSLLARNWSILDNVLETLD
MQQHSLGVLYVLLAKLHSASTANPEPVQLIQLMRDFVQRNNNEQLRYAVC
AFYETCHLFTEFVVQKNLSILGIRIISRAIDQIRQLETQLTPIHADLCLL
SLKAKNFSVVLPYLDADITDISTVAAECKTQQQQQSQHADANNDAKYFLL
YFYYGGMIYTAVKNYERALYFFEVCITTPAMAMSHIMLEAYKKFLMVSLI
VEGKIAYIPKNTQVIGRFMKPMANHYHDLVNVYANSSSEELRIIILKYSE
AFTRDNNMGLAKQVATSLYKRNIQRLTKTFLTLSLSDVASRVQLASAVEA
ERYILNMIKSGEIYASINQKDGMVLFKDDPEKYNSPEMFLNVQNNITHVL
DQVRQINKMEEEIILNPMYVKKALGSQDDDLTSQHPKTFSGDPTD*
BS22525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN3-PA | 445 | CG18332-PA | 1..445 | 1..445 | 2253 | 100 | Plus |
