BS22526.complete Sequence
1778 bp assembled on 2011-02-18
GenBank Submission: KX804492
> BS22526.complete
GAAGTTATCAGTCGACATGGATTTTGGGGACCTGCTGCGCTACGCGAAAA
AAAATAGTGATGCGGTCACCAAGGAGGTGGGGCAGGGGAAATACTACAGC
ACCAAGTATTCGCCCCCCAAGAAGCAGTCCAAGGAGTCCAAGCAGCTGTC
CAGCAACATCCAGAAGTTTCTCCAAAAGAAGGAGGCCGAGGAGGCGGAAA
AGAAACGGCTGGAGCGCCAGAAACTCAACGATCTGCTCGCCAAAAGAGAC
GAAAAGTCCAAGAACAAGATACGTAAAATGCTAAAGGTAACCAAATCGGC
CAACAAATCAGTGCTGGAGGATGCCAAAGACTACGAGGGGGCCATCGACG
GCCACGAGGCGGGCGAGGGTCAGGGCGATGACTACGGCTACGTGTCCACT
GAAGCGAATGCCTTTTACGATAAGTACATTGAAAAGGTACGCGATGTACA
GGAAGACAAGGGATTCACGCCCAGCAGGCCACAGTCGCTAAAAGATCTCT
CTGGGACCAAGGAGCGCGTGAAGGCGGCCATTACCAGGGAACGAGAGGAG
GCCAAGGGTAACACACGTCAGAAAAGCAGCACAAGCACACTCCCATCCAG
CGCTACCAAGTCGAAGGAGTCCTCCGTGGCCCGTTCTTACAGTACCTCCA
AGACTCTTTATGATCCGAACGCAGAGAAGCTCGAGGAGGAGCGCAAAAAG
CGGCAGGAGGAGGAGCAGCGCCGGGCGAAGATAAAACGACCTGCTCAGCC
GCCGCCCATGGACTTCCAAGCCTTGCTTCGCTTAGCTGAAAAGAAACAGC
ACGAGCCCGTGGTTTTTGAGGTGGAGAAAAAAAAGGAACCAGAGCGTTTG
TTGTCGGCCCGTGAGAAACGCGAGTTGGAAGAGCGCCAGCGGCAACAGGA
GCAGCGCGCCCAGCGTCTCAAGATGCGCGAAAGTGAAGGCAAGGAGACTC
CGAAATCCATCCCCAATCGCATGGAGCCTAACGGACGCATCCCCAAGCTT
AATCAAGCCAAGCCAGCCAATGCACCAAGTGATAGTTTTAAAAAACCAAC
TGCCCCACAGCCAACGAAAAGCAGCGCGAGCTCCACCAGTTTATCCAGTT
CCAATTCCCATTCCTCCGCCAGTCGCAGTTCTGTCTCGAGCTCAAGGCCC
GCTACTAAATCAGCTCAATTGACTGCCAGACCTGGCGCAACTGCATCGGC
GGTTGGAAAACCGAGCTCCAGCTCTAGCAGGGATGTCCCATCCAAGAACC
CCTATGCAGCTACTTCCCTAAAGGGAACTGTAAGGGAGTTTCCACCTAGG
GATCAGTCAAGCATCTCAACCTTGGATCGCCGAAAAATTCCGGCAGCTGC
AAAGACGCGACAGACTCCTTCATCGGATGTTCAGAGATCACAGGGCGGGC
GGCAATTCCCGCCCGCAGATGTCAAGAGACGAAAACCTAACGAGCCGCCA
GTCACCAAAAGACGCATTTACGACGACGATGATGAGGATGAATACGATTC
TGAGCTGGATGACTTCATAGATGATGGCGACTGTGAGGAGGATATATCTT
CTCACATCCGCGACATTTTCGGGTATGATAAGCGTCGTTATCAAGGAATA
GACGACGACGATCGTGGCATGGAATCCAGTTTTGCACAAGTGCAGCGCGA
GGAGTTCATCAGCAAGAAGCTGGGAATGCAAGAGGATCTCGAGGACATGC
GCATGGAGGCGGCGCACAAGAAACAAAAGAAGCTCGTGGCGAAAATCAGC
TCACGCTCCTAGAAGCTTTCTAGACCAT
BS22526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5815-RA | 1746 | CG5815-PA | 1..1746 | 17..1762 | 8730 | 100 | Plus |
| CG5815-RC | 1740 | CG5815-PC | 1..1740 | 17..1762 | 8605 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5815-RA | 2302 | CG5815-RA | 63..1808 | 17..1762 | 8730 | 100 | Plus |
| CG5815-RC | 2296 | CG5815-RC | 63..1802 | 17..1762 | 8605 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27112830..27114212 | 79..1461 | 6915 | 100 | Plus |
| 3R | 32079331 | 3R | 27114270..27114487 | 1457..1674 | 1075 | 99.5 | Plus |
| 3R | 32079331 | 3R | 27114543..27114632 | 1673..1762 | 450 | 100 | Plus |
| 3R | 32079331 | 3R | 27112628..27112691 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:24:58 has no hits.
BS22526.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:47 Download gff for
BS22526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5815-RA | 58..1803 | 17..1762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:30 Download gff for
BS22526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5815-RA | 63..1808 | 17..1762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:07 Download gff for
BS22526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5815-RA | 63..1808 | 17..1762 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:07 Download gff for
BS22526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27112628..27112690 | 17..79 | 100 | -> | Plus |
| 3R | 27112831..27114211 | 80..1460 | 100 | -> | Plus |
| 3R | 27114274..27114486 | 1461..1673 | 100 | -> | Plus |
| 3R | 27114544..27114632 | 1674..1762 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:30 Download gff for
BS22526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22939996..22940208 | 1461..1673 | 100 | -> | Plus |
| arm_3R | 22940266..22940354 | 1674..1762 | 100 | | Plus |
| arm_3R | 22938350..22938412 | 17..79 | 100 | -> | Plus |
| arm_3R | 22938553..22939933 | 80..1460 | 100 | -> | Plus |
BS22526.pep Sequence
Translation from 16 to 1761
> BS22526.pep
MDFGDLLRYAKKNSDAVTKEVGQGKYYSTKYSPPKKQSKESKQLSSNIQK
FLQKKEAEEAEKKRLERQKLNDLLAKRDEKSKNKIRKMLKVTKSANKSVL
EDAKDYEGAIDGHEAGEGQGDDYGYVSTEANAFYDKYIEKVRDVQEDKGF
TPSRPQSLKDLSGTKERVKAAITREREEAKGNTRQKSSTSTLPSSATKSK
ESSVARSYSTSKTLYDPNAEKLEEERKKRQEEEQRRAKIKRPAQPPPMDF
QALLRLAEKKQHEPVVFEVEKKKEPERLLSAREKRELEERQRQQEQRAQR
LKMRESEGKETPKSIPNRMEPNGRIPKLNQAKPANAPSDSFKKPTAPQPT
KSSASSTSLSSSNSHSSASRSSVSSSRPATKSAQLTARPGATASAVGKPS
SSSSRDVPSKNPYAATSLKGTVREFPPRDQSSISTLDRRKIPAAAKTRQT
PSSDVQRSQGGRQFPPADVKRRKPNEPPVTKRRIYDDDDEDEYDSELDDF
IDDGDCEEDISSHIRDIFGYDKRRYQGIDDDDRGMESSFAQVQREEFISK
KLGMQEDLEDMRMEAAHKKQKKLVAKISSRS*
BS22526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5815-PA | 581 | CG5815-PA | 1..581 | 1..581 | 2934 | 100 | Plus |
| CG5815-PC | 579 | CG5815-PC | 1..579 | 1..581 | 2910 | 99.7 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3823..4360 | 35..581 | 183 | 18.9 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4018..4565 | 35..579 | 183 | 19.7 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3862..4399 | 35..581 | 183 | 18.9 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 4057..4604 | 35..579 | 183 | 19.7 | Plus |
| Strn-Mlck-PS | 8216 | CG44162-PS | 3823..4360 | 35..581 | 183 | 18.9 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3578..4165 | 11..581 | 173 | 18.8 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3617..4204 | 11..581 | 173 | 18.8 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3446..3970 | 12..581 | 169 | 18.9 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4357..4944 | 15..580 | 169 | 18.2 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3485..4009 | 12..581 | 169 | 18.9 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 4396..4983 | 15..580 | 169 | 18.2 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3513..4110 | 11..579 | 164 | 18.8 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3552..4149 | 11..579 | 164 | 18.8 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4538..5073 | 35..579 | 163 | 19.1 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 4577..5112 | 35..579 | 163 | 19.1 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3512..4035 | 15..581 | 161 | 17.6 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4163..4750 | 11..581 | 161 | 18.3 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4423..5010 | 11..581 | 161 | 19.8 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3551..4074 | 15..581 | 161 | 17.6 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 4202..4789 | 11..581 | 161 | 18.3 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 4462..5049 | 11..581 | 161 | 19.8 | Plus |
