BS22527.complete Sequence
2957 bp assembled on 2011-02-18
GenBank Submission: KX804467
> BS22527.complete
GAAGTTATCAGTCGACATGCAAAAGCAAGAAGAGACGCTGTCGCGCCTGC
GAACGATATTCGACATATTTTTACGCGAGAACTTTTCCACTACGAACAAT
GTTTACTTTGAGAAGCTCCTCACGCACTTGCAGGCCAAGGAGAATGCCTT
TGTGCTGCAGGCCCCATTCGTGGTGGAATGGGTGGACAGGTGCATCACGG
CGGTGACCGAGGACTTCAAAAAGATCCACCCGAAGGTGATATCCTTCATG
CTGAATCTGACCAGTTTTCTGGCGAACAACGAGTGGATGATCGTGCGCCT
AAGAGAGCTTGATATAGTAAACAGAGCAGTGAAACTACTACAGAGGGAAC
ACAACTTAAGCCCATCGATTAAGTTAGGTGGCATACGTCTGATGAAAGCC
ATCACCGTGTATAGCATGGGGCTGGCCTTTCTGCGGATGCACCGGATCTG
GACGCTGCTCATCCAGTATTCCAACAACGATCACACGCTGTACGTGGTGC
GGGAGGCCCGCCAAGTGCTTTACAACATGGTGTACAAGTCCTGCGACAAG
CTGCACGATAAGGCTGTTACCCTGGAGATTCTGTCGGAGATTATGCAGCC
GATTCACGACAATCTTTATAAGAACACCGACGGCGTGGAGCGCATCCACG
TCAAGGTGGACGACAACGAGATGTTGCACAAGATCTCGTCGACACTGGAT
CTACTGTCCTACATACTACAGCAGACGCTGGTGCTCGAGGAGCGCACCAC
TCTGATCATCCTGCTCAAGGAGCATCACGACTTCGAGATTACCGTTTGGA
AGCTGATCGATATGACCCACAACCCGTACTTTACTGAGAAGATCTTCACC
ACACTGAGCAGCTACAACTTTGCCCTGCTGTTGCACGAAAAGTTGCTGAA
TCCGAACGCCACCGAGCCGTCGGAGGAGTTCACCGAGTTCGGGTTGGCAT
TCTTTAATCTCATGAAATTCCTTATTACCCGCAAGGACGGCTTGAGTTTT
GTGAAGTTGGCGGAGCTCAATCATGTACTTTGGAAAAAACTTGGACCTCG
TGCGCCCAAGGAAATTGTCATCCAACAAGAGCGCGTTACGTTTGAAAACC
AGCTAATCTGCTTTCACATGCTGCCGTTGCTCTTCTCCATGAAGTACGCA
CAGAAGATCGCCGACGAGGAGAGCAAGATAGAGCTCTTCGACGCCTATGT
TGTCAAGTTGCTGGAGATCTCCTGCGAACAGACCTTGCGGCTCTGCTACA
CAATGCGGGACAACTTCTTTTCTGCAGACGGCATGGCTGTTGGCTTGGTG
ACGGCCGGCCTGGCAAACAAGTGCATACATAGCCTGTTGGCCCTGGAAAA
CGTTCTCGATCGAGAGCAGGCGGTTACTGTGTGCCAAGCTTTGCTATATG
TGCTCCGCGAGGCAGTGGCCATGAGTGTCATCACAAATAATGGGGAGGAT
GACTGTCACAGCGTGAGCAGCGCGGGCAGCTCCTACCTAAAATTGTACCC
CCGGGGCACCGAACAGGTCGTTAACGATCCACAAGTTTTGCATTCCGTAA
TGGTGGGTTTGCGCACCTTGATCGAACGCTTTAAGATCACGTGGAAGGAG
TCGGTGGAGACCATTGGCCTGGTCAATTGTCTGGCATTTGTCCTGGAGAA
CACAAGCATGGATGCTAGGTGCACTGTCCAAGCGCTGAAGCTCGTCCAAC
TCGCTGTGGAGCATTTCCTTTCACCGAACATGGCTCTTTTGGTGGACAAC
TTGCAGGGCTCCGCGCTGGTCTGTCTGGGTCCCATTATTGTGAAGCGAAT
GCACGACACAATGTGGGAGGTGCGTGACACAACGCTGGAGCTTACCACCT
CTATAGCCAGTATCTCCCGCATCAAGTTTCCCGCCTTCCAACGCTTTCTA
ATCGACTCAAAGATACCCCCGATAGTTTACGAAATGGCCAAGAATGACTC
GGAAGTCTATGTAAGAGCGTCTGCCTTCCAGTGTCTTTCCCAAATGGTCT
CCATAAACCTTTTGTGGGAGAATGGTCTAAGCCAGCTCGATCTTGTAGAC
CATCTTTTGTTTGTAATGTATCGGGAGACCAACGATATCGTGAGATCCGA
GGCCGTGATTACGCTGATGAAGATCTACGAGCACCGCAAGATCCACGAGA
AGTACAAGAACACCCTCTTCTCAACCCTCAACTATTGTGTAATCGGGGAT
CATCACACGGAGGTGAAGCTGAATGCTTTAAATTTTTGGCGCCGCGAGTT
CTACCGCCAGTTTAGCAATCAGGGCATGATAGATGGCTCTTTTCCCACAG
TGACCTTCTCTAAGGAGCAGAAGAAGATTGTCACGCTGACGGAGAAAGAG
ATCCAAACCAGCATTGCCAAAGTTTTTGGTGAAGTACAGCAGTACGGATA
TTTTGGCATCCTACTCAAGTGCCTGCGCGAGGAGACTTCAATGGAGGTTT
TGGAATTCCTCATTAAAGGCGTCAAGACCATGACGGAGAAGTTCGAGCGC
TACAAGGGCATAATGGAGGAGATTGAAATGAGATCGCCGCTCTCAGACAG
AGAGCGGCCAAGATTCGACTTCCCGTCCCAGCCGCAGCCAACTCCGATTC
CACAGCAGCCACCGGTCAATCCCACCGAGGCGGACGAAGTCATCGAGTCC
ATATTGAACTCGCAGGATGCACAGCTCCTGGAGAAGGCGTTTGAGACCCA
GATGCAGATAAACGCGCAAGGGAAAACAGCGGAGAAGCGGCACATCGATG
AGTTCTACTATAAGCAGTTCGCGGTGCCATTGCGGCAGTTCTTTGAGGAG
CTCAAGACCATTGACCTGGACCAGTTGGTTAAGCAGCACCAGGAGTGGTT
CGAGTGCAAGGAGAACTTTACCTCCCTGCTGGATGACATCCTCGGTGCGC
TGAAGCGCGACGATGAGAACATGATTTCGGACTGTTACTAAAAGCTTTCT
AGACCAT
BS22527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7044-RA | 2925 | CG7044-PA | 1..2925 | 17..2941 | 14625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7044-RA | 3171 | CG7044-RA | 147..3071 | 17..2941 | 14625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21099790..21101136 | 1669..323 | 6735 | 100 | Minus |
| 3R | 32079331 | 3R | 21098329..21099222 | 2941..2048 | 4470 | 100 | Minus |
| 3R | 32079331 | 3R | 21099521..21099726 | 1874..1669 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 21101195..21101379 | 324..140 | 925 | 100 | Minus |
| 3R | 32079331 | 3R | 21099289..21099462 | 2048..1875 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 21101449..21101572 | 140..17 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:27:21 has no hits.
BS22527.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:47 Download gff for
BS22527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7044-RA | 143..3065 | 17..2939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:42 Download gff for
BS22527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7044-RA | 147..3069 | 17..2939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:10 Download gff for
BS22527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7044-RA | 147..3069 | 17..2939 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:10 Download gff for
BS22527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21099521..21099725 | 1670..1874 | 100 | <- | Minus |
| 3R | 21098331..21099222 | 2048..2939 | 100 | <- | Minus |
| 3R | 21099290..21099462 | 1875..2047 | 100 | <- | Minus |
| 3R | 21099790..21101134 | 325..1669 | 100 | <- | Minus |
| 3R | 21101195..21101378 | 141..324 | 100 | <- | Minus |
| 3R | 21101449..21101572 | 17..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:42 Download gff for
BS22527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16924053..16924944 | 2048..2939 | 100 | <- | Minus |
| arm_3R | 16925012..16925184 | 1875..2047 | 100 | <- | Minus |
| arm_3R | 16925243..16925447 | 1670..1874 | 100 | <- | Minus |
| arm_3R | 16925512..16926856 | 325..1669 | 100 | <- | Minus |
| arm_3R | 16926917..16927100 | 141..324 | 100 | <- | Minus |
| arm_3R | 16927171..16927294 | 17..140 | 100 | | Minus |
BS22527.pep Sequence
Translation from 16 to 2940
> BS22527.pep
MQKQEETLSRLRTIFDIFLRENFSTTNNVYFEKLLTHLQAKENAFVLQAP
FVVEWVDRCITAVTEDFKKIHPKVISFMLNLTSFLANNEWMIVRLRELDI
VNRAVKLLQREHNLSPSIKLGGIRLMKAITVYSMGLAFLRMHRIWTLLIQ
YSNNDHTLYVVREARQVLYNMVYKSCDKLHDKAVTLEILSEIMQPIHDNL
YKNTDGVERIHVKVDDNEMLHKISSTLDLLSYILQQTLVLEERTTLIILL
KEHHDFEITVWKLIDMTHNPYFTEKIFTTLSSYNFALLLHEKLLNPNATE
PSEEFTEFGLAFFNLMKFLITRKDGLSFVKLAELNHVLWKKLGPRAPKEI
VIQQERVTFENQLICFHMLPLLFSMKYAQKIADEESKIELFDAYVVKLLE
ISCEQTLRLCYTMRDNFFSADGMAVGLVTAGLANKCIHSLLALENVLDRE
QAVTVCQALLYVLREAVAMSVITNNGEDDCHSVSSAGSSYLKLYPRGTEQ
VVNDPQVLHSVMVGLRTLIERFKITWKESVETIGLVNCLAFVLENTSMDA
RCTVQALKLVQLAVEHFLSPNMALLVDNLQGSALVCLGPIIVKRMHDTMW
EVRDTTLELTTSIASISRIKFPAFQRFLIDSKIPPIVYEMAKNDSEVYVR
ASAFQCLSQMVSINLLWENGLSQLDLVDHLLFVMYRETNDIVRSEAVITL
MKIYEHRKIHEKYKNTLFSTLNYCVIGDHHTEVKLNALNFWRREFYRQFS
NQGMIDGSFPTVTFSKEQKKIVTLTEKEIQTSIAKVFGEVQQYGYFGILL
KCLREETSMEVLEFLIKGVKTMTEKFERYKGIMEEIEMRSPLSDRERPRF
DFPSQPQPTPIPQQPPVNPTEADEVIESILNSQDAQLLEKAFETQMQINA
QGKTAEKRHIDEFYYKQFAVPLRQFFEELKTIDLDQLVKQHQEWFECKEN
FTSLLDDILGALKRDDENMISDCY*
BS22527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7044-PA | 974 | CG7044-PA | 1..974 | 1..974 | 5002 | 100 | Plus |
