BS22529.complete Sequence
3113 bp assembled on 2011-02-18
GenBank Submission: KX805008
> BS22529.complete
GAAGTTATCAGTCGACATGGGAGCCAACACGTCGAGCAGCAGCTATCTCA
CGGCGGCCTCGTCGGGCAGCGGAGCCAATAGCAATGCCAGCAACTCGAAT
GGGAACCTATCGGCTATGCCCCCGGGCATGGGGGAGATTCCAGGAGGTGG
CGGTGGATGCTCGGGTGCTTTCGGAAGCAGCAGTAGTTGCGGCCCCAGTG
GGAATGCAGGTGCAGCTCCGGGCATTGTCATCAGTGGCGCTCACTACCAT
CGGGATCAGCGACGGAAGCGTGCCACCGGCTTTGCGACACTCAAACGCAA
GTTCATACGACGACGGCGCTCCTCGAAAGCCTGTGATCACGCTCGCGTCC
TGCGCGACTTTGTATCCGATTGGGCACCCGTGGAACTGGCAGCTCTGTGC
GAGGAGTTCGAGGCATTGTCGGCTCTGAGGGATTTGTCGGTGCAAGCTGA
ACTGGCACGACCGCCGGCGGCAACGTTTAAGCAGGACCTGGCTGCCATCT
ATGAGAAGAACTTGTGCACCGATTGTGATCTGGTCTTTCGTGGAACGATA
TTCTCAGTCCATCGTGCAATATTATCGGCACGCTGTGTATATTTTCGGGA
CCTGCTGGCAGGATGTCCTGGTTTCGGTGCGCGCATATGTCTCGAACTAC
CCACATCCCCCATTGATGTACAACTCTTCTCGTCGCTATTGCGCTACCTA
TACACTGGTGATCTGTGCCCCCATGATCCTAACATTGACATTACTCTATT
GCGGCAATTGGGCAAGGATTTCGGTACACCGAATCCATTGGAGCACGATC
TGCGCTATCTGCTGGAAACAGGTGATTATGCTGACGCAGCACTCGTCTTC
ACGGCAGATGGCAGCAACGACTATCTACGACAAGACTCGGGAACCTCGGA
GTACGGCTTCCGGCCGAAGATCGAACTACCTTGCCATAAAGCGATATTGA
GCGCGCGATCGCCATTCTTTCGCAATCTAATTGCGCGCCGGACACGGAAC
ATGGACGAGTATGTGGAGCGCTCGTTGCACGTGCCCACGCGCATCGTTTT
GGACGAAACTGTTATACCAAAAAGATATGCACGAGTATTGCTGCAGGCCA
TCTACTTGGACTCGGTGGACTTGTCATTGATTTTACGTGGCGTAGGTTCC
GGCACCTCGGCCGGTTCGCTTGGCGAAGTGCACGCACTGACCAATACCGG
CCGGGTGCGGCCAACGACTCTGGAGGAGGCCATGGAGTTATATCAGATCG
GTCGATTTCTGGAGCTGGATATATTGGCACAGGGCTGTGAGGATTTGATT
CTCGAATGGCTGTCCATTGAAACGCTACCCACGGTCCTCAAGTGGGGCTG
CCAGCCGCATGGCTCCGCCTGGGTCTTTCGCCAAGCTTGTCAGTATTTAC
GCGAGGAATTCGCAGCTGTTAGCTCCTCGCCGGTGTTGCACCAACTCGAT
AAATCTCAGTTAATACACATTCTGCATAGTAACTTTCTACAAGCATCCGA
ACTGGAGGTACTGCAGGCCGTTCTCAAATGGGGCGAGCAGGAGCTAATTC
GCCGTATGGAGGATCGGGAGCCCAACTTGCTGTCCCACACAGCCCACTCG
GTGGCGCGCAAGGGTGTCAAGAAACGCGACCTGAGTGATATAGAATTACG
AGAGATACTATCGGAACTGTTGCCACTGGTGCGCATGGATCACGTCCTGC
CGCCTCACTGCGAGGTCCTTTGCCAGGCGATCCGGCGCGGTCTCGTCAGC
ACACCACCTTCGCATATGATCGGCGATGATCGGGAGAATTTACGTATCAA
TGCCTGGATTCGTGGCGGCAAAAATCAGGGCCTGTACGTTAGGCCACGCC
TGTTCATGCCCTATTTCGAGGAGGTGAAGGCGCTCTTGGAGGATCGTATG
TCATCGTCACACCATCAGGTTGAGCTAATGCGAATGCGCCGGTGTCGGCA
TCCTCCCGATATTCCCGATACACTGTACATGGTCTCGCATATGAATTCAA
AGGCGAATAGTGATCTTAGCACAGTAGAAAATCGTAGTACGGACGGAAAT
GTTGATATATTAGTAGGCGCCGCTGTTATTCCACCACCGGACAACCAAAC
GCTGCTGGCCATGCGCAAGCGGGAGCACAAGCTGCGCCAATCGCCCATGT
GCCAGCGAGCATTGCTACTGCCGCTCTCCTCGAAGAGTGAGATCGATCGG
CAGATACGGCTGCGCGTTGTTAGGGAATTCAATCTGCCCGACGAGGTGTC
CGACCTTTTGGAAAGTGCCCTGCAAACCAATCCGGGCAGAAATGAGAGCC
ACGCCGAGGAGACTAGTGCATCGACCTCGCAAAAAGATGACTCACTGCTG
GAGGATGAGGATCAAAGTCCGCCACCCTCGCCGGCGGCCACTTGCTCAGT
GTCGCGACACACCACCGTTGCATCGTCATTCTTATCGCCCATGGGCTCAT
CGGTGGCGTCTTGCGGCACCGACGCCGCTCACCCGTGCTACAGTCGAAAT
CTCACCTTCCCACGCCACCATTCGAATGGCCTGATCGGAGTGGCCAATGC
GTTTGGGTCCAGCTCTGGACCGACGCTGCAGTGCAGCTACTCGCGACTCT
CCTCGTCGGTGCATCAGCGCAATGACCTACCCGCCCTTATCACCGAGGGC
GACTTTCGATTCCCGCATGGCAATGGCCTGGGATTGGACATGGGCGCCGA
GGGCGGTGCCTGCGGCCTGGACACGGCCAATAGCCATCTGTCCGAAATGA
TGCCGGATGTGGCGATGGCCACCGCCTCGCTGGGCCAGCTCCACTTGACA
AATAATGGAGCTGGATGCGCCGGCAACATTGGCGGGCGCGCAGTGAGCAG
CAATAACGACATGTCCGAGAGCTTGCAGCTAGATTTAGGCGATGGCCCGA
GTCCTCATATAATTGGAAGTGCTGTCGGTTCAATGACTCTACGAAATATA
CAGCATCAACTGCCAACAAACAACTATCACCACTTTATGCAGCGTTCGAA
TTCGCCATTTGAAATCCTGCGGCAAGGACAACCATCGCCAACATCACATC
CACAACATTCCGGGACATACAATTCTGGACCACCAAGGTTTTTATAGAAG
CTTTCTAGACCAT
BS22529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16952-RD | 3081 | CG16952-PD | 1..3081 | 17..3097 | 15405 | 100 | Plus |
| CG16952-RC | 3081 | CG16952-PC | 1..3081 | 17..3097 | 15405 | 100 | Plus |
| CG16952-RB | 3081 | CG16952-PB | 1..3081 | 17..3097 | 15405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16952-RD | 4019 | CG16952-RD | 820..3901 | 17..3098 | 15410 | 100 | Plus |
| CG16952-RC | 4040 | CG16952-RC | 841..3922 | 17..3098 | 15410 | 100 | Plus |
| CG16952-RB | 3667 | CG16952-RB | 468..3549 | 17..3098 | 15410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15872691..15875205 | 439..2953 | 12575 | 100 | Plus |
| X | 23542271 | X | 15872192..15872616 | 17..441 | 2125 | 100 | Plus |
| X | 23542271 | X | 15875266..15875412 | 2952..3098 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:28:13 has no hits.
BS22529.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:48 Download gff for
BS22529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16952-RC | 848..3928 | 17..3097 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:54 Download gff for
BS22529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16952-RB | 468..3548 | 17..3097 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:33 Download gff for
BS22529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16952-RB | 468..3548 | 17..3097 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:33 Download gff for
BS22529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15872192..15872614 | 17..439 | 100 | -> | Plus |
| X | 15872692..15875205 | 440..2953 | 100 | -> | Plus |
| X | 15875268..15875411 | 2954..3097 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:54 Download gff for
BS22529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15766225..15766647 | 17..439 | 100 | -> | Plus |
| arm_X | 15766725..15769238 | 440..2953 | 100 | -> | Plus |
| arm_X | 15769301..15769444 | 2954..3097 | 100 | | Plus |
BS22529.pep Sequence
Translation from 16 to 3096
> BS22529.pep
MGANTSSSSYLTAASSGSGANSNASNSNGNLSAMPPGMGEIPGGGGGCSG
AFGSSSSCGPSGNAGAAPGIVISGAHYHRDQRRKRATGFATLKRKFIRRR
RSSKACDHARVLRDFVSDWAPVELAALCEEFEALSALRDLSVQAELARPP
AATFKQDLAAIYEKNLCTDCDLVFRGTIFSVHRAILSARCVYFRDLLAGC
PGFGARICLELPTSPIDVQLFSSLLRYLYTGDLCPHDPNIDITLLRQLGK
DFGTPNPLEHDLRYLLETGDYADAALVFTADGSNDYLRQDSGTSEYGFRP
KIELPCHKAILSARSPFFRNLIARRTRNMDEYVERSLHVPTRIVLDETVI
PKRYARVLLQAIYLDSVDLSLILRGVGSGTSAGSLGEVHALTNTGRVRPT
TLEEAMELYQIGRFLELDILAQGCEDLILEWLSIETLPTVLKWGCQPHGS
AWVFRQACQYLREEFAAVSSSPVLHQLDKSQLIHILHSNFLQASELEVLQ
AVLKWGEQELIRRMEDREPNLLSHTAHSVARKGVKKRDLSDIELREILSE
LLPLVRMDHVLPPHCEVLCQAIRRGLVSTPPSHMIGDDRENLRINAWIRG
GKNQGLYVRPRLFMPYFEEVKALLEDRMSSSHHQVELMRMRRCRHPPDIP
DTLYMVSHMNSKANSDLSTVENRSTDGNVDILVGAAVIPPPDNQTLLAMR
KREHKLRQSPMCQRALLLPLSSKSEIDRQIRLRVVREFNLPDEVSDLLES
ALQTNPGRNESHAEETSASTSQKDDSLLEDEDQSPPPSPAATCSVSRHTT
VASSFLSPMGSSVASCGTDAAHPCYSRNLTFPRHHSNGLIGVANAFGSSS
GPTLQCSYSRLSSSVHQRNDLPALITEGDFRFPHGNGLGLDMGAEGGACG
LDTANSHLSEMMPDVAMATASLGQLHLTNNGAGCAGNIGGRAVSSNNDMS
ESLQLDLGDGPSPHIIGSAVGSMTLRNIQHQLPTNNYHHFMQRSNSPFEI
LRQGQPSPTSHPQHSGTYNSGPPRFL*
BS22529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16952-PD | 1026 | CG16952-PD | 1..1026 | 1..1026 | 5349 | 100 | Plus |
| CG16952-PC | 1026 | CG16952-PC | 1..1026 | 1..1026 | 5349 | 100 | Plus |
| CG16952-PB | 1026 | CG16952-PB | 1..1026 | 1..1026 | 5349 | 100 | Plus |
| CG16952-PA | 1026 | CG16952-PA | 1..1026 | 1..1026 | 5349 | 100 | Plus |
| CG16952-PE | 1013 | CG16952-PE | 1..1013 | 1..1026 | 5245 | 98.7 | Plus |
