BS22530.complete Sequence
791 bp assembled on 2011-01-25
GenBank Submission: KX802033
> BS22530.complete
GAAGTTATCAGTCGACATGTCGATGAGCAATTTATCAATAGACGGCGAGT
TCCGCTACATAATTCAGTGGTTCAACGAGTGGAGTGAACTGCAGCGGGAT
GACTTTGTCTACGTTTTCGTGGAGTACCTGGCCAGGGGATCCAGTTCTGG
CGCCAGCGATGGCCAGGTGAATGGATTGGTCAACTCGCTGGCCAACGCAG
CAGTGCAGGACAAGCCCATGAGCCTGTTCCAATGCCGCATTAAGCTGTTC
CGTGAATGGAGCCCCAAGTGGCCGATCGAGTTCAAATGCAAGCTGCAGGA
GAAGATCAGTGAGATCGACGCGAAGGTGGGGGAGAAGATCATCAATGAGC
TTCGGGGGCCCCATTCCGTGCACAATGGCGACGTAGCCGTACATTTAAAT
GCAAATGGAGCGAGCGAAGAGGGCGGAGACTCCGAACTGGAGCAGATGCC
AGAGTCAGAAGTGACGGAGGTCGCCACTTTGGCGGCGGGGCAAGAAGCTG
ATCCAGCTCCCGAAGCAGATGACAATCGCTTGGCGGCGGTCTTAAGCCAA
GAAACGCCCGTTGATGACGACGACGTGGAAAAGTCTGCCGGTGAAGATTG
CAATAGTAATGCCGATGTAAATGGCCATTATCCAGCGGCTGCAGTGACAA
CGATTGCGGTGAATATATCACCATCGCCATCCCCCACTCCCCAGCCGATT
GTTGAACCTGTAGAACAGGTCGAGAATAGCGTTACAGTCACCGTGGCTTC
TCCAGAAGTTCCCCCCGTGGCTTAGAAGCTTTCTAGACCAT
BS22530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12948-RB | 759 | CG12948-PB | 1..759 | 17..775 | 3780 | 99.9 | Plus |
| CG12948-RA | 759 | CG12948-PA | 1..759 | 17..775 | 3780 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12948-RB | 1519 | CG12948-RB | 476..1234 | 17..775 | 3780 | 99.9 | Plus |
| CG12948-RA | 1281 | CG12948-RA | 238..996 | 17..775 | 3780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9746452..9746988 | 775..239 | 2685 | 100 | Minus |
| 3R | 32079331 | 3R | 9747048..9747269 | 238..17 | 1095 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:25 has no hits.
BS22530.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:38 Download gff for
BS22530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12948-RA | 264..1022 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:54 Download gff for
BS22530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12948-RA | 264..1022 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:13 Download gff for
BS22530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12948-RA | 238..996 | 17..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:13 Download gff for
BS22530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9746452..9746988 | 239..775 | 100 | <- | Minus |
| 3R | 9747048..9747269 | 17..238 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:54 Download gff for
BS22530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5572174..5572710 | 239..775 | 100 | <- | Minus |
| arm_3R | 5572770..5572991 | 17..238 | 99 | | Minus |
BS22530.pep Sequence
Translation from 16 to 774
> BS22530.pep
MSMSNLSIDGEFRYIIQWFNEWSELQRDDFVYVFVEYLARGSSSGASDGQ
VNGLVNSLANAAVQDKPMSLFQCRIKLFREWSPKWPIEFKCKLQEKISEI
DAKVGEKIINELRGPHSVHNGDVAVHLNANGASEEGGDSELEQMPESEVT
EVATLAAGQEADPAPEADDNRLAAVLSQETPVDDDDVEKSAGEDCNSNAD
VNGHYPAAAVTTIAVNISPSPSPTPQPIVEPVEQVENSVTVTVASPEVPP
VA*
BS22530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12948-PB | 252 | CG12948-PB | 1..252 | 1..252 | 1304 | 100 | Plus |
| CG12948-PA | 252 | CG12948-PA | 1..252 | 1..252 | 1304 | 100 | Plus |
