BS22532.complete Sequence
1853 bp assembled on 2011-02-18
GenBank Submission: KX805890
> BS22532.complete
GAAGTTATCAGTCGACATGGCCGAGATCAGGGAGGATGAGGAGGAAAAGA
AGTCGGGCATCAGCATTCTGCCCGGTCCGGAACTATTGGCGCTTCCCGGC
TTCGATACCCGGGCCAGTATTGCATCGGCTGCATTAAGTGATGTTCCAAG
TGATGTGATCATTAAGTCTCGCATTCGATACGGCAGTCCTCTGTCAGCCT
GCAAAGGATTACTTTTGGAGTATGCGAAGAGCACGACCATTCACGGCATA
CGCTACATCTTCGAGGTTCACAGACCGATCTATGAAAAACTTTATTGGCT
TTTCTTCACGTGCATTTCCGTTTACTTTGCCGTTTCACTTATCTGGGACA
CCTATCTAAAGTGGCAGGAATCGCCGGTTATTCTAGGTTTCGACGAGACT
TTGGTGCCAGTGCATAAGATACCGTTTCCCACAATTACCATTTGTCCGGA
AATCAAAATGGAACGCAATGTCTTTGACTATACTAACGTATCGCGACAAC
TTTGGGAGGAGTACAAACAGAATGGCAATATCAGCGATTTGGATGATGAG
GACCTGGCTCGAATGGCGGTTGCAATGCACATCTGTGATTCGGAAGTGGT
GCAGCGGTTTACTCCATTGCTATCGCAGCTAAATCCGCCGAACGTGGACG
TAACCCAAACTCTGATTGACTTGAGTATATCGAAGAATGAGACGGGTCCG
TTTTGCAAGTGGAATGGTCGCTTTTACTTCTGTGACAAGATCTTCGACTT
TGTGGCCACCGACGAGGGTATCTGCTATCAATTCAATGGACTGCGACCCA
AGGACATTTATCGTGACGAGAAGTTCATCAGCTATGTGGATCCGGATGTG
GTGGACTTCAACAAGTACTTCGATGTGGATTTGCCTCCGTGGAACAACAT
AACTGGCAATTGGTCACTGGACACTGGATTCGTGGACCAGGGTCAGAATG
CGTATCCCCAACGGACGGTGTTCTCATCGGTGAAAAATGGGTTCTTCGCC
TTTCTGCAGGGTTTGCAGCATAATTTCGACTACGATTGTCGCAGTTTCAA
ACAGGGCTATAAGGTCTTTCTCAACTCCCCGGAGAGTGTGCCGCTGACGA
CGGGCAATTATATCCTAGTCCCTCATGGCGATGAGGTCCTGGTCAGTGTG
CTGCCAGCATATGTCGTGTCCACTGACAATTTGCACGAAATTACACCCGA
AAAACGCCAATGTCTGTTCGATGATGAGCGATCGCTACGATTCTTCCGTT
CCTATTCCCAGAGCAACTGCCAAACCGAATGTCTGGCCAACTATACGGTT
TCCAAATGCGGTTGTGCCAAATTCTGGATGCCCAAACCTCTTGGCACTCC
CGTTTGTGGCCTCAAGGACATCAATTGCTACACATCGGCCCAGGATGAAC
TCTACACGCTGATGCAAAACCAAACGATGGCCAAGAGTATTGATGAAAGT
GTGGACATCACCTGCAACTGCATGCCAGCCTGCACTTCGCTGGAATATAA
TTTCGAGATATCTAGGGCCAAATACGATGTGGCTAAAACCATTCGAGCCT
TCCGCGAAGAATACGAGCATACGGACGCAATTGGATCCCGACTCTCCGTC
TACTTTAAGGAGCATCAGTTTACGGCCATTAAACGCACTATTCTTTTCGG
GGTATCCACATTGATTTCCAACTGCGGCGGTATCTGCGGATTGTTTATGG
GAATCTCATGTCTGAGTTTCCTGGAGCTAATCTACTTCTTCTGCATGAGA
ATCTGTGGCAGCTGCCGCGATCGCAGGAAGCACAAGATACAACAGCAGAA
CTCAGTGGATTTACCAGAGGAAAAATCTGAGAACTAGAAGCTTTCTAGAC
CAT
BS22532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk-RA | 1821 | CG3478-PA | 1..1821 | 17..1837 | 9105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk-RA | 2462 | CG3478-RA | 39..1859 | 17..1837 | 9105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14379845..14380357 | 1065..553 | 2565 | 100 | Minus |
| 2L | 23513712 | 2L | 14380863..14381134 | 288..17 | 1360 | 100 | Minus |
| 2L | 23513712 | 2L | 14380542..14380805 | 552..289 | 1320 | 100 | Minus |
| 2L | 23513712 | 2L | 14378821..14379082 | 1837..1576 | 1310 | 100 | Minus |
| 2L | 23513712 | 2L | 14379155..14379395 | 1575..1335 | 1205 | 100 | Minus |
| 2L | 23513712 | 2L | 14379652..14379793 | 1203..1062 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 14379455..14379585 | 1334..1204 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:30:01 has no hits.
BS22532.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:48 Download gff for
BS22532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk-RA | 37..1857 | 17..1837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:07 Download gff for
BS22532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk-RA | 39..1859 | 17..1837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:21 Download gff for
BS22532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk-RA | 39..1859 | 17..1837 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:21 Download gff for
BS22532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14380542..14380805 | 289..552 | 100 | <- | Minus |
| 2L | 14380863..14381134 | 17..288 | 100 | | Minus |
| 2L | 14378821..14379082 | 1576..1837 | 100 | <- | Minus |
| 2L | 14379155..14379395 | 1335..1575 | 100 | <- | Minus |
| 2L | 14379455..14379585 | 1204..1334 | 100 | <- | Minus |
| 2L | 14379652..14379791 | 1064..1203 | 100 | <- | Minus |
| 2L | 14379847..14380357 | 553..1063 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:07 Download gff for
BS22532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14378821..14379082 | 1576..1837 | 100 | <- | Minus |
| arm_2L | 14379155..14379395 | 1335..1575 | 100 | <- | Minus |
| arm_2L | 14379455..14379585 | 1204..1334 | 100 | <- | Minus |
| arm_2L | 14379652..14379791 | 1064..1203 | 100 | <- | Minus |
| arm_2L | 14379847..14380357 | 553..1063 | 100 | <- | Minus |
| arm_2L | 14380542..14380805 | 289..552 | 100 | <- | Minus |
| arm_2L | 14380863..14381134 | 17..288 | 100 | | Minus |
BS22532.pep Sequence
Translation from 16 to 1836
> BS22532.pep
MAEIREDEEEKKSGISILPGPELLALPGFDTRASIASAALSDVPSDVIIK
SRIRYGSPLSACKGLLLEYAKSTTIHGIRYIFEVHRPIYEKLYWLFFTCI
SVYFAVSLIWDTYLKWQESPVILGFDETLVPVHKIPFPTITICPEIKMER
NVFDYTNVSRQLWEEYKQNGNISDLDDEDLARMAVAMHICDSEVVQRFTP
LLSQLNPPNVDVTQTLIDLSISKNETGPFCKWNGRFYFCDKIFDFVATDE
GICYQFNGLRPKDIYRDEKFISYVDPDVVDFNKYFDVDLPPWNNITGNWS
LDTGFVDQGQNAYPQRTVFSSVKNGFFAFLQGLQHNFDYDCRSFKQGYKV
FLNSPESVPLTTGNYILVPHGDEVLVSVLPAYVVSTDNLHEITPEKRQCL
FDDERSLRFFRSYSQSNCQTECLANYTVSKCGCAKFWMPKPLGTPVCGLK
DINCYTSAQDELYTLMQNQTMAKSIDESVDITCNCMPACTSLEYNFEISR
AKYDVAKTIRAFREEYEHTDAIGSRLSVYFKEHQFTAIKRTILFGVSTLI
SNCGGICGLFMGISCLSFLELIYFFCMRICGSCRDRRKHKIQQQNSVDLP
EEKSEN*
BS22532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk-PA | 606 | CG3478-PA | 1..606 | 1..606 | 3253 | 100 | Plus |
| rpk-PA | 562 | CG1058-PA | 15..552 | 46..579 | 983 | 37 | Plus |
| ppk26-PC | 597 | CG8546-PC | 47..594 | 42..598 | 973 | 35.1 | Plus |
| rpk-PB | 568 | CG1058-PB | 15..558 | 46..579 | 966 | 36.6 | Plus |
| ppk8-PH | 569 | CG32792-PH | 41..522 | 68..588 | 508 | 27.7 | Plus |
