BS22533.complete Sequence
1472 bp assembled on 2011-01-25
GenBank Submission: KX804524
> BS22533.complete
GAAGTTATCAGTCGACATGACGCGACCCAAACAGGATGGCGGCAAGTTCA
AGGCCTTCATGCAGGAGAATGTCCTTACCATGGCCACCGTTATCGGTGTG
TTTGTGGGTGGACTCATCGGCTTCATCATCAAAAATAGCACTGGCGAGTG
GTCGAAGAGAGAGATCATGTACATATCCTTCCCCGGCGAGATTTTCTTGC
GAATGCTTAAATGTTTGATTGTGCCGCTTTTGGTCTCATCAATCACCAGT
GCCATTGGTGGACTCGACCTGAGCATGTCCAGCAAGATTGCTACCAGAGC
CATTACTTACTACTTTGTGACCACCATATCGGCCGTGATTCTGGGAATAT
GTCTGGTGACCACACTGCGTCCCGGCCAGGGAGCCAAGATCGTGGAGACC
CAGACGGAGAGCATTGATAAGGCATCGAAGGTGCTCACCCCAGACACGCT
TATGGATTTGGTGCGAAACATGTTCACGGACAACATCATTCAGTCGACCA
TGTTCCAGCACCGCACTGAGATCTATGAGAACACTAGCATTAGCCCAGCA
CAGCCTATGGAAAACTGGGAGTTCAAGTCGGCTCAGCGCGAGGGTTCTAA
TGTCCTGGGTCTTGTGATGTTCAGTGTTATCCTAGGTACCACCATTGGAA
GAATGCGGGAGAAGGGACAACTGCTGCAGGATTTCTTCACCACACTGAGC
GAGGCAATGATGACCATCACCTCATGGGTTATTTGGATTTCCCCGCTGGG
TGTTGCCTTTCTGATAGCCGCCAAGATCATTGAGATGGAATCGATAGCAG
CAACGATTCAGTCATTAGGATGGTATTTCATAACGGTCATGATAGGTCTA
TTCCTTCACGGTTTTGGTACGATTGCGGTGATCTTCTTCCTGGGCACCCG
ACGTCTCCCGTACCGCTATATTGCCAAGCTTAGTCAGGTCCTGGCAACTG
CATTTGGAACAGGTTCCAGCTCGGCCACCATGCCGCTGACCATCAAGTGT
TTGGACAACATGGGCATCGATCCGCGGGTTACTCGATTTGTCATTCCTGT
TGGTGCCACAATTAACATGGACGGAACGGCTCTCTATGAGGCTGTGGCTG
CTCTGTTCATCGCCCAATACCGTGAGATGAGCTATTCCTTCGGCACCATT
GTGGCCGTCAGCATAACAGCCACGGCGGCATCGATTGGAGCTGCTGGAAT
CCCGCAGGCTGGACTTGTTACCATGGTCATGGTGCTGGACACAGTGGGCT
TGGAGCCGAAGGATGTGTCCCTCATCATAGCCGTCGATTGGCTACTGGAT
CGCTTCCGCACCACCATTAATGTAATGTGCGATGCTCTAGGCACTATTTT
GGTTAACCATCTGTCGAAGAATGATTTGGCCAGCGTGGATAGGCTGAATG
CCGAGCCCCATGAGCTCCTCGAGCTGGGACCCAATGGCCACGAGATGAAG
GAATGAAAGCTTTCTAGACCAT
BS22533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaat1-RD | 1440 | CG3747-PD | 1..1440 | 17..1456 | 7200 | 100 | Plus |
| Eaat1-RC | 1440 | CG3747-PC | 1..1440 | 17..1456 | 7200 | 100 | Plus |
| Eaat1-RA | 1440 | CG3747-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaat1-RD | 2984 | CG3747-RD | 381..1822 | 16..1457 | 7210 | 100 | Plus |
| Eaat1-RC | 2878 | CG3747-RC | 275..1716 | 16..1457 | 7210 | 100 | Plus |
| Eaat1-RA | 3012 | CG3747-RA | 409..1850 | 16..1457 | 7210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9340058..9340489 | 866..1297 | 2160 | 100 | Plus |
| 2L | 23513712 | 2L | 9338154..9338339 | 16..201 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 9339620..9339804 | 552..736 | 925 | 100 | Plus |
| 2L | 23513712 | 2L | 9338583..9338755 | 293..465 | 865 | 100 | Plus |
| 2L | 23513712 | 2L | 9339865..9339999 | 735..869 | 675 | 100 | Plus |
| 2L | 23513712 | 2L | 9340544..9340644 | 1297..1397 | 490 | 99 | Plus |
| 2L | 23513712 | 2L | 9338425..9338521 | 201..297 | 485 | 100 | Plus |
| 2L | 23513712 | 2L | 9340699..9340763 | 1393..1457 | 325 | 100 | Plus |
| 2L | 23513712 | 2L | 9339512..9339556 | 507..551 | 225 | 100 | Plus |
| 2L | 23513712 | 2L | 9338817..9338860 | 465..508 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:54:24 has no hits.
BS22533.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:39 Download gff for
BS22533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat1-RC | 272..1710 | 17..1455 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:14 Download gff for
BS22533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat1-RA | 410..1848 | 17..1455 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:30 Download gff for
BS22533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat1-RA | 410..1848 | 17..1455 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:30 Download gff for
BS22533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9340544..9340640 | 1297..1393 | 100 | -> | Plus |
| 2L | 9340700..9340761 | 1394..1455 | 100 | | Plus |
| 2L | 9339620..9339803 | 552..735 | 100 | -> | Plus |
| 2L | 9339866..9339996 | 736..866 | 100 | -> | Plus |
| 2L | 9339514..9339556 | 509..551 | 100 | -> | Plus |
| 2L | 9338155..9338339 | 17..201 | 100 | -> | Plus |
| 2L | 9338426..9338521 | 202..297 | 100 | -> | Plus |
| 2L | 9338588..9338755 | 298..465 | 100 | -> | Plus |
| 2L | 9338818..9338860 | 466..508 | 100 | -> | Plus |
| 2L | 9340059..9340488 | 867..1296 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:14 Download gff for
BS22533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9340059..9340488 | 867..1296 | 100 | -> | Plus |
| arm_2L | 9338426..9338521 | 202..297 | 100 | -> | Plus |
| arm_2L | 9340544..9340640 | 1297..1393 | 100 | -> | Plus |
| arm_2L | 9340700..9340761 | 1394..1455 | 100 | | Plus |
| arm_2L | 9338155..9338339 | 17..201 | 100 | -> | Plus |
| arm_2L | 9338588..9338755 | 298..465 | 100 | -> | Plus |
| arm_2L | 9338818..9338860 | 466..508 | 100 | -> | Plus |
| arm_2L | 9339514..9339556 | 509..551 | 100 | -> | Plus |
| arm_2L | 9339620..9339803 | 552..735 | 100 | -> | Plus |
| arm_2L | 9339866..9339996 | 736..866 | 100 | -> | Plus |
BS22533.pep Sequence
Translation from 16 to 1455
> BS22533.pep
MTRPKQDGGKFKAFMQENVLTMATVIGVFVGGLIGFIIKNSTGEWSKREI
MYISFPGEIFLRMLKCLIVPLLVSSITSAIGGLDLSMSSKIATRAITYYF
VTTISAVILGICLVTTLRPGQGAKIVETQTESIDKASKVLTPDTLMDLVR
NMFTDNIIQSTMFQHRTEIYENTSISPAQPMENWEFKSAQREGSNVLGLV
MFSVILGTTIGRMREKGQLLQDFFTTLSEAMMTITSWVIWISPLGVAFLI
AAKIIEMESIAATIQSLGWYFITVMIGLFLHGFGTIAVIFFLGTRRLPYR
YIAKLSQVLATAFGTGSSSATMPLTIKCLDNMGIDPRVTRFVIPVGATIN
MDGTALYEAVAALFIAQYREMSYSFGTIVAVSITATAASIGAAGIPQAGL
VTMVMVLDTVGLEPKDVSLIIAVDWLLDRFRTTINVMCDALGTILVNHLS
KNDLASVDRLNAEPHELLELGPNGHEMKE*
BS22533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaat1-PD | 479 | CG3747-PD | 1..479 | 1..479 | 2402 | 100 | Plus |
| Eaat1-PC | 479 | CG3747-PC | 1..479 | 1..479 | 2402 | 100 | Plus |
| Eaat1-PA | 479 | CG3747-PA | 1..479 | 1..479 | 2402 | 100 | Plus |
| Eaat1-PB | 479 | CG3747-PB | 1..479 | 1..479 | 2402 | 100 | Plus |
| Eaat2-PD | 563 | CG3159-PD | 26..509 | 11..475 | 836 | 35.7 | Plus |
