BS22534.complete Sequence
1598 bp assembled on 2011-02-18
GenBank Submission: KX801919
> BS22534.complete
GAAGTTATCAGTCGACATGGATGAGCAGCATCAGAACCTCAATCAAAATG
GCAGCGAATCCAATGGTAAGCAGGCCAGGATCGTTTCGGGACTTGATCGT
CTGCTGAAGACTCCTCCGCCTGGCGAACAGACAAGAGCAGTGCGGCGACA
AGTGATCGCTGTTATCCTGGCCAACGTGGGTGTCTTCTCAACGGGAATGA
CCCTGGCCATGCCCACCGCCACTCTGCATCAGCTGAAGGACACCACGGAG
CCAGTGCATCTGAACGATTCGCAGGCTTCCTGGTTCGCATCGGTAAACGC
TCTGTCCGCTCCTATAGGCGGCTTGCTGTCCGGTTTCTTGCTTGACAGGA
TTGGAAGGAAGAAATCCCTGATAGTGCTCAATGTACTGATTATTCTTGCT
TGGATTCTGCTGGCCACACCCAGTGAGAGCGACCAAAATGCCTTCTTTTG
GCAACTAATTGTCTCACGATTTATGCTGGGTGTTGGTATGGGACTGGCCA
GTGCGCCACCAGGAGTCTATGCAGCCGAGATCAGTGTGCCCAAGACGAGG
GGCAGTCTTATACTGGGCACATCCATTTCAGTGGCCGGTGGCATAACGAT
TCTCTACGGAATTGGTTACTGCATCCGCGATGATTTCCGACTGATTGCCC
TCATCTGCTGTGGCTACCAGCTGGTGGCCCTGCTCTGCGTGCTGCCACTT
CCGGAAAGTCATTGCTGGCTTCTGTCCAAGAAGCGTGTGACGGAGGCGAA
GAGATCACTTAACTACTTCCGTGGATTCAACAAATCGGATGAAATCACCC
ATCCCCAAGTGCTCGAAGAGTTCCAGCTTCTGCAGAAATCCCTGCAGCAA
AGGAACACCGCGGTGAAGGAGTCCTTTTGGCGTAATCTGCACGAACCGGA
GGTCTACAAGCCATTGGTCATCCTGATGAGCTTGTTCGCCTTCCAGCAGC
TAACCGGAATCTTTGTGGTCATCGTCTTCGCCGTGCAAATTTCCCAAGAG
GCGGGCATCGAAATCGATCCCTTCATGTGCGCCGTGCTCATTGGTTTGGC
TCGCTTGATCACCACATGCCCCATGGGATACATCCTGGAGTGGTGGGGTC
GCCGAAGGGCAGGGATTATCTCCACTTTGGGCATGTCCGTGTGCATGTTC
CTTTTGGCGGGACATAGCCAAATCGAGATCCTTAAGGAAGTCCCATATCT
CCCGGTGGTGGCCATTGTGGGCTTCATTGTGCTGAGCACTCTAGGTCTTT
ACACCCTGCCCTTCTTTATGATCTCCGAGCTTTTTCCGCAAAAGGTTCGA
GGGCCCGCTTCAGGACTCACCGTGGCCGTGGGCATGTTCATTTCGTTCGT
GGTCTTGAAGACCTATCCCGGCATCAAGGAATACCTGGGAATGTCGAATT
GCTTCATCATTTTTGGGGTCATGGCTCTGTTTGCCCTGATCTTCGTTTAT
CTCGCCCTCCCAGAGACGCGTCGTCGAACGCTCTTGGAGATCGAGGAGCA
GTTCCGATCGGGTCGCAGTAAGTCTCAAAACCAGGCTGATGTTGAAATGA
AGGAGGTTTTTGTTCGAAAGCCCGAGGAATAGAAGCTTTCTAGACCAT
BS22534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8249-RC | 1566 | CG8249-PC | 1..1566 | 17..1582 | 7830 | 100 | Plus |
| CG8249-RB | 1566 | CG8249-PB | 1..1566 | 17..1582 | 7830 | 100 | Plus |
| CG8249-RA | 1566 | CG8249-PA | 1..1566 | 17..1582 | 7830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8249-RC | 3283 | CG8249-RC | 260..1825 | 17..1582 | 7830 | 100 | Plus |
| CG8249-RB | 2094 | CG8249-RB | 409..1974 | 17..1582 | 7830 | 100 | Plus |
| CG8249-RA | 1945 | CG8249-RA | 260..1825 | 17..1582 | 7830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15844218..15845012 | 1582..788 | 3975 | 100 | Minus |
| 2R | 25286936 | 2R | 15845682..15846146 | 481..17 | 2325 | 100 | Minus |
| 2R | 25286936 | 2R | 15845300..15845613 | 792..479 | 1555 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:23:57 has no hits.
BS22534.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:46 Download gff for
BS22534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8249-RA | 258..1823 | 17..1582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:22 Download gff for
BS22534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8249-RA | 260..1825 | 17..1582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:39 Download gff for
BS22534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8249-RA | 260..1825 | 17..1582 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:39 Download gff for
BS22534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15844218..15845011 | 789..1582 | 100 | <- | Minus |
| 2R | 15845304..15845612 | 480..788 | 100 | <- | Minus |
| 2R | 15845684..15846146 | 17..479 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:22 Download gff for
BS22534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11731723..11732516 | 789..1582 | 100 | <- | Minus |
| arm_2R | 11732809..11733117 | 480..788 | 100 | <- | Minus |
| arm_2R | 11733189..11733651 | 17..479 | 100 | | Minus |
BS22534.pep Sequence
Translation from 16 to 1581
> BS22534.pep
MDEQHQNLNQNGSESNGKQARIVSGLDRLLKTPPPGEQTRAVRRQVIAVI
LANVGVFSTGMTLAMPTATLHQLKDTTEPVHLNDSQASWFASVNALSAPI
GGLLSGFLLDRIGRKKSLIVLNVLIILAWILLATPSESDQNAFFWQLIVS
RFMLGVGMGLASAPPGVYAAEISVPKTRGSLILGTSISVAGGITILYGIG
YCIRDDFRLIALICCGYQLVALLCVLPLPESHCWLLSKKRVTEAKRSLNY
FRGFNKSDEITHPQVLEEFQLLQKSLQQRNTAVKESFWRNLHEPEVYKPL
VILMSLFAFQQLTGIFVVIVFAVQISQEAGIEIDPFMCAVLIGLARLITT
CPMGYILEWWGRRRAGIISTLGMSVCMFLLAGHSQIEILKEVPYLPVVAI
VGFIVLSTLGLYTLPFFMISELFPQKVRGPASGLTVAVGMFISFVVLKTY
PGIKEYLGMSNCFIIFGVMALFALIFVYLALPETRRRTLLEIEEQFRSGR
SKSQNQADVEMKEVFVRKPEE*
BS22534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8249-PC | 521 | CG8249-PC | 1..521 | 1..521 | 2646 | 100 | Plus |
| CG8249-PB | 521 | CG8249-PB | 1..521 | 1..521 | 2646 | 100 | Plus |
| CG8249-PA | 521 | CG8249-PA | 1..521 | 1..521 | 2646 | 100 | Plus |
| CG4607-PB | 525 | CG4607-PB | 27..525 | 27..518 | 1109 | 44.9 | Plus |
| CG4607-PA | 525 | CG4607-PA | 27..525 | 27..518 | 1109 | 44.9 | Plus |
