BS22539.complete Sequence
404 bp assembled on 2011-01-25
GenBank Submission: KX802356
> BS22539.complete
GAAGTTATCAGTCGACATGGTGAAGGTTAAGTGCTCCGAGCTGAGGATCA
AGGACAAGAAGGAACTCACCAAGCAATTGGATGAGCTCAAGAATGAGTTG
CTCAGCCTGCGCGTGGCCAAGGTGACCGGCGGAGCTCCCTCCAAGCTCTC
CAAGATCCGCGTTGTCCGCAAGGCCATCGCTCGCGTCTACATTGTGATGC
ACCAGAAGCAGAAGGAGAATCTGCGCAAGGTCTTCAAGAACAAGAAGTAC
AAGCCCCTGGATCTGCGCAAGAAGAAGACCCGCGCTATCCGCAAGGCCCT
GTCTCCGCGCGACGCCAACCGCAAGACCCTCAAGGAGATCCGCAAGCGCT
CCGTCTTCCCCCAGAGGAAGTTCGCCGTCAAGGCCTAGAAGCTTTCTAGA
CCAT
BS22539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL35-RC | 372 | CG4111-PC | 1..372 | 17..388 | 1860 | 100 | Plus |
| RpL35-RA | 372 | CG4111-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
| RpL35-RB | 372 | CG4111-PB | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL35-RC | 590 | CG4111-RC | 120..493 | 17..390 | 1870 | 100 | Plus |
| RpL35-RA | 606 | CG4111-RA | 140..513 | 17..390 | 1870 | 100 | Plus |
| RpL35-RB | 507 | CG4111-RB | 41..414 | 17..390 | 1870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5673217..5673450 | 157..390 | 1170 | 100 | Plus |
| X | 23542271 | X | 5672997..5673134 | 19..156 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:55:47 has no hits.
BS22539.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:43 Download gff for
BS22539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL35-RA | 216..587 | 17..388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:45 Download gff for
BS22539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL35-RB | 41..412 | 17..388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:00 Download gff for
BS22539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL35-RB | 41..412 | 17..388 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:00 Download gff for
BS22539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5672996..5673134 | 17..156 | 99 | -> | Plus |
| X | 5673217..5673448 | 157..388 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:45 Download gff for
BS22539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5567029..5567167 | 17..156 | 99 | -> | Plus |
| arm_X | 5567250..5567481 | 157..388 | 100 | | Plus |
BS22539.pep Sequence
Translation from 16 to 387
> BS22539.pep
MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVV
RKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDA
NRKTLKEIRKRSVFPQRKFAVKA*
BS22539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL35-PC | 123 | CG4111-PC | 1..123 | 1..123 | 602 | 100 | Plus |
| RpL35-PA | 123 | CG4111-PA | 1..123 | 1..123 | 602 | 100 | Plus |
| RpL35-PB | 123 | CG4111-PB | 1..123 | 1..123 | 602 | 100 | Plus |
