BS22540.complete Sequence
1019 bp assembled on 2011-01-25
GenBank Submission: KX803843
> BS22540.complete
GAAGTTATCAGTCGACATGTCCAAGGATCACTGGATGAGGGATCTGCCAA
GCGAGTTGCGTGACCTGTCGATAATCAATCTGGCTATTCCAGGTTCCCAC
AATTCGATGACTTATGGCATAAATAGCAAGTCCGAACTATCGCCAGATGC
GGAAATTTCGATTAGGCGGTGGCATCGCTTCTTTCCCTGCTTCGTGCGCC
GTTGGAGCAAGACGCAATCTTCTGGAACACTGGATCAACTGGAGCTGGGA
GTGCGGTACTTTGACCTAAGGATAGCCCAGAAGGATGATAAGTTCTACTA
CTGTCATGGCCTTTTTGCCATGGAGATTTTTGAGCCACTTCTGGAGATTC
GCCAGTTCGTGGACACCCATCCAGAGGAGGTGGTAATCCTGGATCTGCAG
CACTTTTACGCCATGACAGTGGCTCATCACCAGAAGCTGCACAAGGATCT
GATCCAGTTCTTCGCCCATCGTCTGTACTCCACAGTGGATGGTTCACTCA
AGGATTGTACTCTGAATAGATGCTTGGAAATGCAGCGCAGCGTGGTGATC
ATCTACAGGCGATGTCCCATTCCACTGCCGCTGAGATTCTGGCCCAGTTA
TGCGTGGCCCACACCGTGGCCCAATAAAGCGAGTGTCAAGAAGCTGCAGT
CCTTTCTGGAGGATTCCCTACTCTCGCGACAGCCCCAACAGGGTTATGTC
TCCCAGTGCCTTATCACGCCCACTGGTCGCTATATCGCCTTCCGGCTCTT
CTTCACCCTGAAGAGCACAGCCAAACGGGTGGACAAGAAGCTGCAGCCTT
GGATTCAGGAACAGATTCCAGGTCCCTTCGAGCCAAAGGACGAGCCAAGG
GTAAACGTGTTCCTGGCCGACTTCGTAAGCCTAAAGGGCGGACAGTTCTG
CGATTGGGTAGTTGATCTGAACACAAAACTACTTGAGCAATTGGCTGGCG
ATAAGGAGCTGGAGTCCACTGAAGGCGTGGAAGAGGAGGAGGCCCAAGGT
TGAAAGCTTTCTAGACCAT
BS22540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10747-RB | 987 | CG10747-PB | 1..987 | 17..1003 | 4935 | 100 | Plus |
| CG10747-RA | 987 | CG10747-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10747-RB | 1600 | CG10747-RB | 220..1208 | 16..1004 | 4945 | 100 | Plus |
| CG10747-RA | 1529 | CG10747-RA | 149..1137 | 16..1004 | 4945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20090028..20090941 | 1004..91 | 4570 | 100 | Minus |
| 2L | 23513712 | 2L | 20090996..20091074 | 94..16 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:55:56 has no hits.
BS22540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:43 Download gff for
BS22540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10747-RA | 148..1133 | 17..1002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:48 Download gff for
BS22540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10747-RA | 150..1135 | 17..1002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:04 Download gff for
BS22540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10747-RA | 150..1135 | 17..1002 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:04 Download gff for
BS22540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20090030..20090939 | 93..1002 | 100 | <- | Minus |
| 2L | 20090998..20091073 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:48 Download gff for
BS22540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20090030..20090939 | 93..1002 | 100 | <- | Minus |
| arm_2L | 20090998..20091073 | 17..92 | 100 | | Minus |
BS22540.pep Sequence
Translation from 16 to 1002
> BS22540.pep
MSKDHWMRDLPSELRDLSIINLAIPGSHNSMTYGINSKSELSPDAEISIR
RWHRFFPCFVRRWSKTQSSGTLDQLELGVRYFDLRIAQKDDKFYYCHGLF
AMEIFEPLLEIRQFVDTHPEEVVILDLQHFYAMTVAHHQKLHKDLIQFFA
HRLYSTVDGSLKDCTLNRCLEMQRSVVIIYRRCPIPLPLRFWPSYAWPTP
WPNKASVKKLQSFLEDSLLSRQPQQGYVSQCLITPTGRYIAFRLFFTLKS
TAKRVDKKLQPWIQEQIPGPFEPKDEPRVNVFLADFVSLKGGQFCDWVVD
LNTKLLEQLAGDKELESTEGVEEEEAQG*
BS22540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10747-PB | 328 | CG10747-PB | 1..328 | 1..328 | 1756 | 100 | Plus |
| CG10747-PA | 328 | CG10747-PA | 1..328 | 1..328 | 1756 | 100 | Plus |
