Clone BS22544 Report

Search the DGRC for BS22544

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:225
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptskl-RA
Protein status:BS22544.pep: full length peptide match
Sequenced Size:359

Clone Sequence Records

BS22544.complete Sequence

359 bp assembled on 2011-01-25

GenBank Submission: KX802685

> BS22544.complete
GAAGTTATCAGTCGACATGGCCATTCCATTTTTCGAAGAAGAGCACGCCC
CGAAATCGGAACCCAGTGGCGATCAAGTCGATAGCCCCATGGCTTTCTCC
ATAGACCCCGGACATGATCAAGTGGACTTTGAAGGACCTCCGTCTGCAGC
AGAGGAACTCCCGCCACCAGGAGCAACAAGTGAGCCAGTTGCGCCTCCGA
GTGCCGAGGAGCAACTGCTGGCCTGGAAATTCCTGGCCATCACCATGTGC
AAGGTCCTGAAGCAATTTTACCAACAGCACAAGTCGTCCGGAAAATCCAG
CAAACTAAAGGCCACCGTTCAAATACAACCGCAGGCGCAGTAAAAGCTTT
CTAGACCAT

BS22544.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
skl-RA 327 CG13701-PA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
skl-RA 1382 CG13701-RA 116..444 17..345 1645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18439499..18439827 345..17 1645 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:56:07 has no hits.

BS22544.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:44 Download gff for BS22544.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 111..435 17..341 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:52 Download gff for BS22544.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 116..440 17..341 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:06 Download gff for BS22544.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 116..440 17..341 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:06 Download gff for BS22544.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18439503..18439827 17..341 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:52 Download gff for BS22544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18432603..18432927 17..341 100   Minus

BS22544.pep Sequence

Translation from 16 to 342

> BS22544.pep
MAIPFFEEEHAPKSEPSGDQVDSPMAFSIDPGHDQVDFEGPPSAAEELPP
PGATSEPVAPPSAEEQLLAWKFLAITMCKVLKQFYQQHKSSGKSSKLKAT
VQIQPQAQ*

BS22544.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
skl-PA 108 CG13701-PA 1..108 1..108 567 100 Plus