BS22545.complete Sequence
1094 bp assembled on 2011-01-25
GenBank Submission: KX804001
> BS22545.complete
GAAGTTATCAGTCGACATGGAGAATCGCTTATTAGTTATATGGCTGCTTC
TTGCCATCGCCACGGCATTGGTTAAGGCCGAACTTACAGATATATCCGCT
ATCTGCAGGATATCCGATCCCTGGCAAATGCTGCCCCACAAAGACCACTG
CCAAAGGTTCTATGTTTGCACTGGCGACGATGACATGCCCTTCCAGGAGT
TCAACTGTCCGGCGGAGTACCATTTTAGCAAGAAGCTCATGATTTGTGTA
CCCGGAGCCTGCACCGATGAATCCGTATTTTGTGGACTTACGAATAGTGT
GGAGCGAGTCCAAAGCGATTGCACGCGATACCGACAATGCCTGGAGGGAG
GATCCTTCGCCGTGGCCAAATGTTCCGTCGGAAACTACTTTGATCCAGCC
CGAAGAGCCTGCCTCCCAGTGGCCATAAGTGCGGCCCATCAGTGCAGCTG
TGTGCTGCCGGATAATGCCACCCTGGCGAATCCAAGCGACTGCGAGACAT
ATTTCCGCTGTCACTCCGGACAAGCGGAGCTGGTCCAGTGTCCATCAGGA
GACTACTTTGACGAACGAGTGAGCAGCTGTGTGCCGGATCACACGGGAAT
TTGCCTGGAAAAGCCCACAATGCCGCCGACACTCACAGAGCAAGCTCTTG
CCATGGACGAGTGCATCCGGACGGGCAGCCGCCTGGCACCGCACAGCCGA
GATTGCCAACGTTACTACATATGCGCCAAAAAGAGGGTGCTGGAAATGCG
CTGTCCGAGGGGTCAGTATTTTGACGTTGTACGGCGCTACTGCGCTCTTG
ATCTGGGAAGCGAATGCCAGGCTCTGCAGGCCGAGAAACAAGACCTGGAG
CTGGAGGAGAATATTCAGGTAGAGCTGGAAAAGAATATCCAGATGGACAT
TCCAGCGAAACATAAGGTAAAGAATCAGGGACACAAGCCGGTTCAGAAGA
ACTCCGAAAAGGAAGTGGTCCGCGACCAGGAATTACCAGTGCCGCAGGCT
AATGACAAACTTCCACAGCCCTCAGCCGAGGCAGTGAGCAGCTACGATAA
GTTCTCGTCGAAGTTCATTTCTATGTAAAAGCTTTCTAGACCAT
BS22545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| obst-J-RA | 1062 | CG7348-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| obst-J-RA | 1235 | CG7348-RA | 48..1109 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20130577..20131631 | 1078..24 | 5275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:56:11 has no hits.
BS22545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:45 Download gff for
BS22545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-J-RA | 45..1104 | 17..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:54 Download gff for
BS22545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-J-RA | 48..1107 | 17..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:07 Download gff for
BS22545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-J-RA | 48..1107 | 17..1076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:07 Download gff for
BS22545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20130579..20131636 | 17..1076 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:54 Download gff for
BS22545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20123679..20124736 | 17..1076 | 99 | | Minus |
BS22545.pep Sequence
Translation from 16 to 1077
> BS22545.pep
MENRLLVIWLLLAIATALVKAELTDISAICRISDPWQMLPHKDHCQRFYV
CTGDDDMPFQEFNCPAEYHFSKKLMICVPGACTDESVFCGLTNSVERVQS
DCTRYRQCLEGGSFAVAKCSVGNYFDPARRACLPVAISAAHQCSCVLPDN
ATLANPSDCETYFRCHSGQAELVQCPSGDYFDERVSSCVPDHTGICLEKP
TMPPTLTEQALAMDECIRTGSRLAPHSRDCQRYYICAKKRVLEMRCPRGQ
YFDVVRRYCALDLGSECQALQAEKQDLELEENIQVELEKNIQMDIPAKHK
VKNQGHKPVQKNSEKEVVRDQELPVPQANDKLPQPSAEAVSSYDKFSSKF
ISM*
BS22545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| obst-J-PA | 353 | CG7348-PA | 1..353 | 1..353 | 1906 | 100 | Plus |
| CG31077-PB | 988 | CG31077-PB | 120..313 | 64..271 | 252 | 28.4 | Plus |
| CG43896-PB | 1324 | CG43896-PB | 211..469 | 30..267 | 247 | 27.2 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 211..469 | 30..267 | 247 | 27.2 | Plus |
| CG43896-PC | 2113 | CG43896-PC | 211..469 | 30..267 | 247 | 27.2 | Plus |
| CG43896-PB | 1324 | CG43896-PB | 280..541 | 22..267 | 206 | 25.2 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 280..541 | 22..267 | 206 | 25.2 | Plus |
| CG43896-PB | 1324 | CG43896-PB | 3..249 | 15..253 | 196 | 25.2 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 3..249 | 15..253 | 196 | 25.2 | Plus |
| CG31077-PB | 988 | CG31077-PB | 27..209 | 80..279 | 182 | 25 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 1292..1504 | 80..274 | 181 | 25 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 1682..1939 | 28..259 | 176 | 23.6 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 1636..1889 | 39..285 | 170 | 24.5 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 1760..2030 | 39..259 | 167 | 23.4 | Plus |
| CG43896-PB | 1324 | CG43896-PB | 42..206 | 101..267 | 160 | 22.7 | Plus |
| CG43896-PD | 2113 | CG43896-PD | 42..206 | 101..267 | 160 | 22.7 | Plus |
