BS22548.complete Sequence
533 bp assembled on 2011-01-25
GenBank Submission: KX806179
> BS22548.complete
GAAGTTATCAGTCGACATGAAAATCCTCTCCCGTCTGGGTCGCCTGATGC
GCTACACGGTGGCCTACGCGGCAATCACACACTGCACCTTCGAGTACATT
GGCGATTTCGTCCTGTGCAAAGGACCCTCCATGGAGCCCACCCTGCACTC
GGACAACGTTCTTCTCACCGAGCGCTTGTCGAAACACTGGCGAACCTACC
AGCCCGGCGACATAGTCATCGCCATATCGCCCATCAAAGCCGATCAGTTC
ATTTGCAAGCGTATCGTGGCCGTTTCCGGTGATCAGGTGCTAATCCAGAA
GCCCATTCCCATTGAGGCGGAGTTTAGTGGTAATTCGGATGACAAGAAGA
AGCCCGTGATGGTCAAGGACTATGTGCCGCGCGGACACGTTTGGATTGAG
GGTGACAACAAGGGAAACAGCTCGGATTCCCGCTACTACGGACCCATTCC
GGTGGGCCTCATCCGGAGCCGCGTGCTCTGCCGCATCTGGCCGATATCCG
AGGCCACGGGTCTATAGAAGCTTTCTAGACCAT
BS22548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9240-RA | 501 | CG9240-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
| CG9240-RB | 387 | CG9240-PB | 1..387 | 131..517 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9240-RA | 907 | CG9240-RA | 169..674 | 13..518 | 2530 | 100 | Plus |
| CG9240-RB | 991 | CG9240-RB | 355..758 | 115..518 | 2020 | 100 | Plus |
| CG9240-RB | 991 | CG9240-RB | 169..271 | 13..115 | 515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15700405..15700812 | 518..111 | 2025 | 99.8 | Minus |
| X | 23542271 | X | 15700989..15701091 | 115..13 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:54:58 has no hits.
BS22548.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:41 Download gff for
BS22548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9240-RA | 291..791 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:28 Download gff for
BS22548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9240-RA | 173..673 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:42 Download gff for
BS22548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9240-RA | 173..673 | 17..517 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:42 Download gff for
BS22548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15700406..15700807 | 116..517 | 100 | <- | Minus |
| X | 15700989..15701087 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:28 Download gff for
BS22548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15594439..15594840 | 116..517 | 100 | <- | Minus |
| arm_X | 15595022..15595120 | 17..115 | 100 | | Minus |
BS22548.pep Sequence
Translation from 16 to 516
> BS22548.pep
MKILSRLGRLMRYTVAYAAITHCTFEYIGDFVLCKGPSMEPTLHSDNVLL
TERLSKHWRTYQPGDIVIAISPIKADQFICKRIVAVSGDQVLIQKPIPIE
AEFSGNSDDKKKPVMVKDYVPRGHVWIEGDNKGNSSDSRYYGPIPVGLIR
SRVLCRIWPISEATGL*
BS22548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9240-PA | 166 | CG9240-PA | 1..166 | 1..166 | 879 | 100 | Plus |
| CG9240-PB | 128 | CG9240-PB | 1..128 | 39..166 | 678 | 100 | Plus |
| CG11110-PA | 171 | CG11110-PA | 4..142 | 9..159 | 169 | 33.1 | Plus |
