BS22549.complete Sequence
1052 bp assembled on 2011-01-25
GenBank Submission: KX802800
> BS22549.complete
GAAGTTATCAGTCGACATGGCGGACGTGGAAATTATGCAAACGGTGCAAA
CGGAAGTGAAGAAGACCACGAAAAAGGTTAAGAAGTCGTCGAAGCGACGC
GAATCCGAGGTCCAGATCAGCGAGGTCGAGGTGGATGCCACCATCGAGGA
AAGAGGTGGCGAGTACACAAAAGCCATGGACAAGGACTGGCACTCCGGAC
ACTTCTGCTGCTGGCAATGCGACGAGAGCCTCACCGGACAGCGTTACGTC
ATCCGGGACGATCATCCGTACTGCATCAAGTGCTACGAGAATGTGTTCGC
CAATACGTGCGAGGAGTGCAACAAGATCATTGGCATCGACTCCAAGGATC
TGTCCTACAAAGACAAGCACTGGCACGAGGCCTGTTTCCTGTGCTTCAAG
TGCCATCTGTCGCTGGTGGACAAGCAGTTTGGAGCCAAGGCGGATAAGAT
CTACTGTGGAAACTGCTACGATGCCCAGTTTGCGTCCCGCTGCGATGGCT
GCGGCGAAGTTTTCCGCGCAGGCACCAAGAAAATGGAGTATAAAACCAGG
CAGTGGCACGAGAATTGCTTCTGCTGCTGCGTCTGCAAGACGGCCATTGG
GACCAAGTCCTTCATCCCGCGGGAGCAGGAGATCTATTGCGCCGGCTGCT
ACGAGGAGAAGTTTGCCACGCGCTGCATCAAGTGCAATAAGGTCATCACC
TCGGGAGGTGTTACCTACAAGAACGAGCCGTGGCATCGCGAGTGCTTCAC
CTGCACCCACTGCAACATCACGCTAGCTGGCCAGCGATTCACCAGCCGCG
ACGAGAAGCCCTATTGTGCGGAGTGCTTTGGCGAGCTCTTTGCCAAAAGG
TGCACGGCCTGTGTGAAGCCCATAACAGGCATTGGCGGCACACGCTTCAT
ATCGTTTGAGGATCGCCACTGGCATCACGACTGCTTTGTGTGTGCCAGCT
GCAAGGCTAGTCTGGTTGGTCGTGGCTTCATCACCGACGGACCCGATATC
CTGTGCCCCGATTGTGCCAAGCAGAAGCTGATGTAAAAGCTTTCTAGACC
AT
BS22549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RC | 1020 | CG42679-PC | 1..1020 | 17..1036 | 5100 | 100 | Plus |
| Lmpt-RM | 1680 | CG42679-PM | 800..1680 | 156..1036 | 4405 | 100 | Plus |
| Lmpt-RN | 1590 | CG42679-PN | 710..1590 | 156..1036 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RC | 2099 | CG32171-RC | 187..1206 | 17..1036 | 5100 | 100 | Plus |
| Lmpt-RF | 2110 | CG32171-RF | 187..1217 | 17..1036 | 4955 | 98.9 | Plus |
| Lmpt-RO | 1894 | CG42679-RO | 121..1001 | 156..1036 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16912139..16912330 | 156..347 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 16921178..16921367 | 690..879 | 950 | 100 | Plus |
| 3L | 28110227 | 3L | 16913222..16913399 | 345..522 | 890 | 100 | Plus |
| 3L | 28110227 | 3L | 16920879..16921053 | 519..693 | 875 | 100 | Plus |
| 3L | 28110227 | 3L | 16921430..16921594 | 872..1036 | 810 | 99.4 | Plus |
| 3L | 28110227 | 3L | 16911452..16911591 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:58:24 has no hits.
BS22549.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:46 Download gff for
BS22549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RC | 186..1203 | 17..1034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:17 Download gff for
BS22549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RC | 187..1204 | 17..1034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:52 Download gff for
BS22549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RC | 187..1204 | 17..1034 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:52 Download gff for
BS22549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16920882..16921051 | 522..691 | 100 | -> | Plus |
| 3L | 16921180..16921366 | 692..878 | 100 | -> | Plus |
| 3L | 16921437..16921592 | 879..1034 | 100 | | Plus |
| 3L | 16911452..16911591 | 17..156 | 100 | -> | Plus |
| 3L | 16912140..16912329 | 157..346 | 100 | -> | Plus |
| 3L | 16913224..16913398 | 347..521 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:17 Download gff for
BS22549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16913982..16914151 | 522..691 | 100 | -> | Plus |
| arm_3L | 16914280..16914466 | 692..878 | 100 | -> | Plus |
| arm_3L | 16914537..16914692 | 879..1034 | 100 | | Plus |
| arm_3L | 16904552..16904691 | 17..156 | 100 | -> | Plus |
| arm_3L | 16905240..16905429 | 157..346 | 100 | -> | Plus |
| arm_3L | 16906324..16906498 | 347..521 | 100 | -> | Plus |
BS22549.pep Sequence
Translation from 16 to 1035
> BS22549.pep
MADVEIMQTVQTEVKKTTKKVKKSSKRRESEVQISEVEVDATIEERGGEY
TKAMDKDWHSGHFCCWQCDESLTGQRYVIRDDHPYCIKCYENVFANTCEE
CNKIIGIDSKDLSYKDKHWHEACFLCFKCHLSLVDKQFGAKADKIYCGNC
YDAQFASRCDGCGEVFRAGTKKMEYKTRQWHENCFCCCVCKTAIGTKSFI
PREQEIYCAGCYEEKFATRCIKCNKVITSGGVTYKNEPWHRECFTCTHCN
ITLAGQRFTSRDEKPYCAECFGELFAKRCTACVKPITGIGGTRFISFEDR
HWHHDCFVCASCKASLVGRGFITDGPDILCPDCAKQKLM*
BS22549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-PC | 339 | CG42679-PC | 1..339 | 1..339 | 1930 | 100 | Plus |
| Lmpt-PN | 529 | CG42679-PN | 238..529 | 48..339 | 1708 | 100 | Plus |
| Lmpt-PD | 558 | CG32171-PD | 267..558 | 48..339 | 1708 | 100 | Plus |
| Lmpt-PH | 558 | CG32171-PH | 267..558 | 48..339 | 1708 | 100 | Plus |
| Lmpt-PM | 559 | CG42679-PM | 268..559 | 48..339 | 1708 | 100 | Plus |
| Lmpt-PN | 529 | CG42679-PN | 188..405 | 119..337 | 438 | 35 | Plus |
| Lmpt-PD | 558 | CG32171-PD | 217..434 | 119..337 | 438 | 35 | Plus |
| Lmpt-PH | 558 | CG32171-PH | 217..434 | 119..337 | 438 | 35 | Plus |
| Lmpt-PN | 529 | CG42679-PN | 162..279 | 207..333 | 161 | 27.6 | Plus |
| Lmpt-PD | 558 | CG32171-PD | 191..308 | 207..333 | 161 | 27.6 | Plus |
| Lmpt-PH | 558 | CG32171-PH | 191..308 | 207..333 | 161 | 27.6 | Plus |
