BS22551.complete Sequence
893 bp assembled on 2011-01-25
GenBank Submission: KX801611
> BS22551.complete
GAAGTTATCAGTCGACATGCGCGCATTCATTGTCCTGTGTTTGGTGGCAG
TCACCTGCGCCGATAAGCTCGGCTACAACTACCAGCCCGTTGGCCACTCC
AGCTCCGGACTGTCCTTCGCTCCTGGCAGCGGCTCTATCAGTGGTGGATC
TATTGGAGGAGGCTCCATCGGAGGAGGTTCTATTGGAGGAGGCTCTATTG
GAGGAGGCCTCATTGGTGGTGGCTCTATCGGAGGAGGAAGCATCGGAGGT
GGATCCCTTGGTGGTTCCATCGGTGGTGGCTCCATCGATTCCGGTCTTGG
CGGTCTTGGTGGACTCGGTGGTCTAGGAGGTGGCGACGCTCTGGCCGCTC
CAGTCTCCTACAACGCCCCCGCTCCCGCTGCTGAGCTCCAGAAGGAATTC
TTCACCTACTCCGCCAACGAGCAGGACTTCGATGAGCCACAAGAACTGGA
GCGTGTTGCTGGATCCGTAAACAAGGGACTGCGCGTTGTCTTCATCAAGG
GACCCGAGAACCGTGGTCTGGAGAACGCTGCCCTGGCCCTCGCCAAGCAG
GCTGCCCAGCAGGAGACCGCCATCTATGTCCTGAACAAGCAGGCTGATAT
TGGAGATCTTGCCCAGAAACTGAACGCCATCCGCAACAACAACAACAACA
AGCCCGAGGTGCACTTCGTCAAGTACCGCACTCCCGAGGATGCTGCCAAC
GCCCAGCGCGCCATCCAGGGTCAGTACGACCAGCTGGGAGGATCCTCTCA
GGCTCATGATGGTGGTGTTGCACCCGCCCTGAACTTCGCCTCCGCTGGAC
CCGTCCAGAAGGCTAACGCCCAGATCCCCGACAACGCCTACCTGCCCACT
TCTGTGTTCCGTCGTCTGCGTTTCTAGAAGCTTTCTAGACCAT
BS22551.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlB-RA | 861 | CG6478-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
| TwdlL-RA | 858 | CG6447-PA | 1..850 | 17..866 | 3380 | 93.2 | Plus |
| TwdlL-RB | 840 | CG6447-PB | 8..832 | 42..866 | 3345 | 93.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlB-RA | 1025 | CG6478-RA | 48..908 | 17..877 | 4305 | 100 | Plus |
| TwdlL-RA | 1002 | CG6447-RA | 51..900 | 17..866 | 3380 | 93.2 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 140..964 | 42..866 | 3345 | 93.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26622568..26623413 | 877..32 | 4230 | 100 | Minus |
| 3R | 32079331 | 3R | 26624689..26625513 | 866..42 | 3345 | 93.7 | Minus |
| 3R | 32079331 | 3R | 26632323..26632849 | 346..872 | 1750 | 88.8 | Plus |
| 3R | 32079331 | 3R | 26619592..26620103 | 353..864 | 1630 | 87.9 | Plus |
| 3R | 32079331 | 3R | 26630220..26630621 | 392..793 | 1185 | 86.3 | Plus |
| 3R | 32079331 | 3R | 26628051..26628458 | 793..386 | 1170 | 85.8 | Minus |
| 3R | 32079331 | 3R | 26634088..26634452 | 383..747 | 850 | 82.2 | Plus |
| 3R | 32079331 | 3R | 26626108..26626448 | 804..464 | 820 | 82.7 | Minus |
| 3R | 32079331 | 3R | 26619263..26619462 | 36..235 | 445 | 81.5 | Plus |
| 3R | 32079331 | 3R | 26620800..26621063 | 745..482 | 435 | 77.7 | Minus |
| 3R | 32079331 | 3R | 26631931..26632046 | 17..132 | 385 | 88.8 | Plus |
| 3R | 32079331 | 3R | 26656956..26657063 | 491..598 | 300 | 85.2 | Plus |
| 3R | 32079331 | 3R | 26640530..26640720 | 542..732 | 295 | 77 | Plus |
Blast to na_te.dros performed 2014-11-26 14:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7802..7847 | 118..163 | 113 | 71.7 | Plus |
BS22551.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:47 Download gff for
BS22551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlB-RA | 53..913 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:20 Download gff for
BS22551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlB-RA | 48..908 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:56 Download gff for
BS22551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlB-RA | 48..908 | 17..877 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:56 Download gff for
BS22551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26622568..26623413 | 32..877 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:20 Download gff for
BS22551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22448290..22449135 | 32..877 | 100 | <- | Minus |
BS22551.pep Sequence
Translation from 16 to 876
> BS22551.pep
MRAFIVLCLVAVTCADKLGYNYQPVGHSSSGLSFAPGSGSISGGSIGGGS
IGGGSIGGGSIGGGLIGGGSIGGGSIGGGSLGGSIGGGSIDSGLGGLGGL
GGLGGGDALAAPVSYNAPAPAAELQKEFFTYSANEQDFDEPQELERVAGS
VNKGLRVVFIKGPENRGLENAALALAKQAAQQETAIYVLNKQADIGDLAQ
KLNAIRNNNNNKPEVHFVKYRTPEDAANAQRAIQGQYDQLGGSSQAHDGG
VAPALNFASAGPVQKANAQIPDNAYLPTSVFRRLRF*
BS22551.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlB-PA | 286 | CG6478-PA | 1..286 | 1..286 | 1466 | 100 | Plus |
| TwdlL-PA | 285 | CG6447-PA | 1..283 | 1..283 | 1424 | 97.5 | Plus |
| TwdlL-PB | 279 | CG6447-PB | 1..277 | 7..283 | 1396 | 97.5 | Plus |
| TwdlM-PA | 288 | CG5468-PA | 1..288 | 1..284 | 1243 | 84.1 | Plus |
| TwdlN-PA | 309 | CG5476-PA | 1..307 | 1..286 | 1090 | 74 | Plus |
