BS22553.complete Sequence
521 bp assembled on 2011-01-25
GenBank Submission: KX805386
> BS22553.complete
GAAGTTATCAGTCGACATGGTCCAACGCTTGACTCTGAGACGACGTCTGT
CGTACAACACCCGCTCCAACAAGAGGCGCATTGTGCGCACTCCCGGAGGC
CGTCTGGTGTACCAGTACGTGAAGAAGAACCCCACTGTGCCACGCTGTGG
TCAGTGCAAGGAGAAACTCCACGGGATCACCCCCTCCCGGCCCAGCGAGC
GTCCCAGGATGTCCAAGCGTTTGAAGACCGTCTCCAGGACCTACGGAGGT
GTCCTGTGCCACAGCTGCCTGCGAGAGAGAATCGTCCGCGCTTTCCTCAT
CGAAGAGCAGAAGATCGTCAAGGCTCTGAAGAGCCAGCGCGAGGCTTTGG
TCAAGCCCGTCAAGAAGGTTGTGGAGAAGAAGCCGGTGAAGGCTGCCGCC
AAGAAGCCCGCGGGAAAGGCAGCCGGAAAGCCAGGTGCCAAAGTCGCCGG
CAAGAAGCCCGCTCCCAAGGGCGCTCCTAAAGGAGTCGTCAAGTCCAAGA
AGTAAAAGCTTTCTAGACCAT
BS22553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34a-RC | 489 | CG6090-PC | 1..489 | 17..505 | 2445 | 100 | Plus |
RpL34a-RB | 489 | CG6090-PB | 1..489 | 17..505 | 2445 | 100 | Plus |
RpL34a-RA | 489 | CG6090-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34a-RC | 603 | CG6090-RC | 41..529 | 17..505 | 2445 | 100 | Plus |
RpL34a-RB | 621 | CG6090-RB | 59..547 | 17..505 | 2445 | 100 | Plus |
RpL34a-RA | 606 | CG6090-RA | 44..532 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26058494..26058917 | 505..82 | 2120 | 100 | Minus |
3R | 32079331 | 3R | 9400596..9400878 | 364..82 | 830 | 86.2 | Minus |
3R | 32079331 | 3R | 26058980..26059044 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 1445..1520 | 335..406 | 118 | 65.8 | Plus |
BS22553.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:48 Download gff for
BS22553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34a-RB | 59..545 | 17..503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:28 Download gff for
BS22553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34a-RA | 44..530 | 17..503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:07 Download gff for
BS22553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34a-RA | 44..530 | 17..503 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:07 Download gff for
BS22553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26058496..26058917 | 82..503 | 100 | <- | Minus |
3R | 26058980..26059044 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:28 Download gff for
BS22553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21884218..21884639 | 82..503 | 100 | <- | Minus |
arm_3R | 21884702..21884766 | 17..81 | 100 | | Minus |
BS22553.pep Sequence
Translation from 16 to 504
> BS22553.pep
MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK
LHGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKI
VKALKSQREALVKPVKKVVEKKPVKAAAKKPAGKAAGKPGAKVAGKKPAP
KGAPKGVVKSKK*
BS22553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34a-PC | 162 | CG6090-PC | 1..162 | 1..162 | 827 | 100 | Plus |
RpL34a-PB | 162 | CG6090-PB | 1..162 | 1..162 | 827 | 100 | Plus |
RpL34a-PA | 162 | CG6090-PA | 1..162 | 1..162 | 827 | 100 | Plus |
RpL34b-PD | 168 | CG9354-PD | 1..162 | 1..153 | 618 | 82.7 | Plus |
RpL34b-PC | 168 | CG9354-PC | 1..162 | 1..153 | 618 | 82.7 | Plus |