Clone BS22554 Report

Search the DGRC for BS22554

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:225
Well:54
Vector:pDNR-Dual
Associated Gene/Transcriptcrok-RA
Protein status:BS22554.pep: full length peptide match
Sequenced Size:488

Clone Sequence Records

BS22554.complete Sequence

488 bp assembled on 2011-01-25

GenBank Submission: KX806384

> BS22554.complete
GAAGTTATCAGTCGACATGAAAACACTGGAGAAATATATCCTATTCGCCA
TCGTGCTCTGCTGCCTGCTGCAATTGGGCCAGGCGATCAAATGTTGGGAC
TGTCGCAGCGATAACGATCCCAAATGCGGGGATCCTTTTGACAACAGCAC
GCTGGCCATCACCGATTGCCAACAGGCGCCGGAGCTGGAGCATCTGAAGG
GCGTGCGACCGACAATGTGTCGCAAGATCCGGCAGAAGGTGCACGGTGAA
TGGCGCTACTTTCGCAGCTGCGCCTACATGGGCGAGCCGGGCATCGAGGG
CGACGAACGCTTCTGCCTGATGCGCACTGGCAGCTACAACATCTTCATGG
AGTTCTGCACGTGCAACAGCAAGGACGGCTGCAACTCGGCGGGCATCCAT
AGGCTAGGACTGATGGGCGTCCTAACTGGCACACTGCTCTCGGTGATTGT
GGCTCATCTTCTGCGGCAATAGAAGCTTTCTAGACCAT

BS22554.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
crok-RA 456 CG17218-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
crok-RA 1033 CG17218-RA 90..545 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12173208..12173603 77..472 1980 100 Plus
2L 23513712 2L 12173070..12173131 17..78 310 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:59:36 has no hits.

BS22554.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:48 Download gff for BS22554.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RA 87..542 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:34 Download gff for BS22554.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RA 90..545 17..472 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:16 Download gff for BS22554.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RA 90..545 17..472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:16 Download gff for BS22554.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12173209..12173603 78..472 100   Plus
2L 12173070..12173130 17..77 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:34 Download gff for BS22554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12173070..12173130 17..77 100 -> Plus
arm_2L 12173209..12173603 78..472 100   Plus

BS22554.pep Sequence

Translation from 16 to 471

> BS22554.pep
MKTLEKYILFAIVLCCLLQLGQAIKCWDCRSDNDPKCGDPFDNSTLAITD
CQQAPELEHLKGVRPTMCRKIRQKVHGEWRYFRSCAYMGEPGIEGDERFC
LMRTGSYNIFMEFCTCNSKDGCNSAGIHRLGLMGVLTGTLLSVIVAHLLR
Q*

BS22554.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
crok-PA 151 CG17218-PA 1..151 1..151 831 100 Plus
CG6329-PF 155 CG6329-PF 5..122 4..125 255 39.8 Plus
CG6329-PE 155 CG6329-PE 5..122 4..125 255 39.8 Plus
CG6329-PD 155 CG6329-PD 5..122 4..125 255 39.8 Plus
CG6329-PB 155 CG6329-PB 5..122 4..125 255 39.8 Plus