BS22558.complete Sequence
479 bp assembled on 2011-01-25
GenBank Submission: KX801794
> BS22558.complete
GAAGTTATCAGTCGACATGGTGTCCGCTCTGAAATGCAGTTTGGCCGTGG
CCGTTATGATCAGTCTGGCTTGTTCGGCCTACGCCATCAAGTGCTACCAG
TGCGAGTCCCTCACAATGCCCAAGTGTGGCCTGAAGTTCGAGGCTGATGA
GACGTTGCTGCTGGACTGCTCCAGGATCGGACCCCCACGCTACCTGCAGA
ACTTCTTCCCCCTGCGGAACGCCACTGGTTGCATGAAGAAGACCCTCGAA
AGCGTGGCCGGACATCCGCAGATCGTGAGGAGCTGCTACTTCGGGGACAT
CAACAATATCCAAGCTGGCTGCCAGTCGGATCCCTCTATGCCGTTCGTTA
AGCAGCTGGGCTGCGATGTCTGCACCAAGGACGAGTGCAACGGATCCTCC
TCCCTGGCCCCCATCGCCGGAGCCATCCTGCTCTTCTTCGGCGTGGCTCG
TCTGCTGGCCTAGAAGCTTTCTAGACCAT
BS22558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9336-RA | 447 | CG9336-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
| CG9336-RB | 348 | CG9336-PB | 1..348 | 116..463 | 1740 | 100 | Plus |
| CG9338-RB | 444 | CG9338-PB | 146..442 | 162..461 | 430 | 77 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9336-RA | 678 | CG9336-RA | 108..555 | 17..464 | 2240 | 100 | Plus |
| CG9336-RB | 636 | CG9336-RB | 126..513 | 77..464 | 1940 | 100 | Plus |
| CG9338-RB | 1087 | CG9338-RB | 224..520 | 162..461 | 430 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20860681..20860891 | 254..464 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 20859724..20859901 | 77..254 | 890 | 100 | Plus |
| 2L | 23513712 | 2L | 20866947..20867142 | 266..461 | 350 | 78.6 | Plus |
| 2L | 23513712 | 2L | 20859273..20859333 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:56:19 has no hits.
BS22558.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:46 Download gff for
BS22558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9336-RA | 105..551 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:58 Download gff for
BS22558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9336-RA | 108..554 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:11 Download gff for
BS22558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9336-RA | 108..554 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:11 Download gff for
BS22558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20859273..20859333 | 17..77 | 100 | -> | Plus |
| 2L | 20859725..20859901 | 78..254 | 100 | -> | Plus |
| 2L | 20860682..20860890 | 255..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:58 Download gff for
BS22558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20859273..20859333 | 17..77 | 100 | -> | Plus |
| arm_2L | 20859725..20859901 | 78..254 | 100 | -> | Plus |
| arm_2L | 20860682..20860890 | 255..463 | 100 | | Plus |
BS22558.pep Sequence
Translation from 16 to 462
> BS22558.pep
MVSALKCSLAVAVMISLACSAYAIKCYQCESLTMPKCGLKFEADETLLLD
CSRIGPPRYLQNFFPLRNATGCMKKTLESVAGHPQIVRSCYFGDINNIQA
GCQSDPSMPFVKQLGCDVCTKDECNGSSSLAPIAGAILLFFGVARLLA*
BS22558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9336-PA | 148 | CG9336-PA | 1..148 | 1..148 | 782 | 100 | Plus |
| CG9336-PB | 115 | CG9336-PB | 1..115 | 34..148 | 617 | 100 | Plus |
| CG9338-PB | 147 | CG9338-PB | 1..147 | 1..148 | 524 | 62.8 | Plus |
| CG9338-PA | 147 | CG9338-PA | 1..147 | 1..148 | 524 | 62.8 | Plus |
| CG31675-PA | 148 | CG31675-PA | 6..148 | 9..147 | 267 | 40.3 | Plus |
