BS22559.complete Sequence
1796 bp assembled on 2011-02-18
GenBank Submission: KX800536
> BS22559.complete
GAAGTTATCAGTCGACATGGATGTGGAAGAGTTTCGCAAATACGGCAAGG
AAGTGATTGATTATATATGCCAATACGGCACTAATATAGAGGAGCGTGAC
GTGGCGCCCACCTTGGATCCGGGTTACCTCAAAAAACTGCTACCAGCCGA
CGCTCCCCAGTCGCCGGAGCCGTTCAAGGACGTGCTCGAGGACTTCGAGC
AGAAGATCATGCCGGGCGTGGTGCACTGGAACCACCCCAAGTTCTTCGCC
TACTTCCCCTCGGGCAACTCTTTTCCATCGGTCCTAGGCGACATGCTCAG
CAGTGCCATTGGTTCAATTGGCTTCAGCTGGGCCAGCTGTCCGGCGGCTG
CCGAGCTGGAGACGATCGTGATGAACTGGTACGCCAAGGCCCTTGGCCTG
CCCAAGGCCTTTGTTTCGGATGCCCCAGGCAGTACAGGCGGCGGCGCCCT
TCAGGGATCCGCCTCAGAGTGCGTTCTCGTCTCTCTAATCACAGCCCGCG
CCCGGGCCATCAGCGAGCTAAAGGGTCAGACCAGCGTTCACGACAGCGTC
TTCCTGCCCAGCCTGATCGCATACGCCAGCCGTGAGGCACACTCCTCCGT
GGAAAAGGCCACCAAGATGGCCCTGGTGAAGCTCCGGATAATCGATGCCG
ACGAGCATGGACGCATGCGCGTTGACCTACTCCGCCAAGCAATTCAAAAC
GATGTGAACGCCGGCTTGACACCCTTCTTTGTAGTGGCCACTGTGGGTAC
CACCGGCGGCTGCGCTTTCGACGACATCACGGAGATCGGAAAGGTGTGCC
GCCAGGTGTCGAGCATTTGGCTGCACGTAGACGGCGCCTATGCGGGAAAC
TCCTTCATTCTGCCCGAGATGCGGGTCTTTTCGGCAGGACTCGAATACGC
CGACTCCTTCAACACAAATCCCAACAAGCTTCTGCTGACGAACTTCGATG
CCTCTGCCCTGTGGGTGCGGGATGTGATGAACCTTAAGAGCGCGCTCAAC
GTGAATCCCCTCTACCTACGACACGAGCACTTGACCGGAGTTGACTACCG
CCACTACGGCATTCCCCTGAGTCGCCGATTCCGGGCACTCAAGCTGTGGT
TCGTCTTCCGGACATACGGCATTCGGGGCCTACAGGAATACATTCGAAAT
CATATGGCGTTGGCTAAGAAGTTTGAGATGCTGGTGCGCAAGGATGAACG
ATTTGAGGTTCGCAACGATGTTCACCTTGGCCTAGTTTGCTTCCGAATGC
GAACTGGCGACGAGCCCAACCACATGCTGCTCGCCCAGATCAACCACTCG
GGCAAGATGCATATGACGCCGGCCAAGTTCAACGGCCGCTACGTGATCCG
CTTCTGCGTCACCTACGAGCACGCCACTGAGAAGGACATCCTGGAAGCTT
GGACCCAGATAAAGTGCTTTGCTGAGGAAATACTGCGGGACCACCAGCTG
GAGTCCAGCTCCGTGCCAACCACGCCGGAAGGCTCAGAGCGGACCAGCTC
AGAGCCATTGGCTCCAGTGGCGGGCAAGCCACCCATCAAAAAGAGGCTGA
CCAGGACAAAGTCGCTGCGATTCTCCTTCACTCGCAGCATCTCGCGGGAG
CAGTACCAGAGCCAGAGCGAGCACCTAATGGACGGGTGCACACCCATCCT
GGTCGTCGATCCCAAAACTCTTCAGGAGAACTTCCAAAAGGCGGCGGATG
ACAATGACAGGAACAACAGCAATGGCAACGTAAAACTCAAAGATATATCA
GACGTGGATACGGACGAGGCGAGTAACTGAAAGCTTTCTAGACCAT
BS22559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tdc1-RA | 1764 | CG30445-PA | 1..1764 | 17..1780 | 8820 | 100 | Plus |
| Tdc2-RA | 1914 | CG30446-PA | 878..959 | 891..972 | 230 | 85.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tdc1-RA | 2281 | CG30445-RA | 213..1976 | 17..1780 | 8820 | 100 | Plus |
| Tdc2-RA | 2303 | CG30446-RA | 1040..1121 | 891..972 | 230 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6677957..6679065 | 1251..143 | 5545 | 100 | Minus |
| 2R | 25286936 | 2R | 6677306..6677835 | 1780..1251 | 2650 | 100 | Minus |
| 2R | 25286936 | 2R | 6680050..6680179 | 146..17 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 6687268..6687349 | 972..891 | 230 | 85.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:30:48 has no hits.
BS22559.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:49 Download gff for
BS22559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc1-RA | 208..1970 | 17..1779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:15 Download gff for
BS22559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc1-RA | 213..1975 | 17..1779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:46 Download gff for
BS22559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc1-RA | 213..1975 | 17..1779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:46 Download gff for
BS22559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6677307..6677834 | 1252..1779 | 100 | <- | Minus |
| 2R | 6677957..6679061 | 147..1251 | 100 | <- | Minus |
| 2R | 6680050..6680179 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:15 Download gff for
BS22559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2564812..2565339 | 1252..1779 | 100 | <- | Minus |
| arm_2R | 2565462..2566566 | 147..1251 | 100 | <- | Minus |
| arm_2R | 2567555..2567684 | 17..146 | 100 | | Minus |
BS22559.pep Sequence
Translation from 16 to 1779
> BS22559.pep
MDVEEFRKYGKEVIDYICQYGTNIEERDVAPTLDPGYLKKLLPADAPQSP
EPFKDVLEDFEQKIMPGVVHWNHPKFFAYFPSGNSFPSVLGDMLSSAIGS
IGFSWASCPAAAELETIVMNWYAKALGLPKAFVSDAPGSTGGGALQGSAS
ECVLVSLITARARAISELKGQTSVHDSVFLPSLIAYASREAHSSVEKATK
MALVKLRIIDADEHGRMRVDLLRQAIQNDVNAGLTPFFVVATVGTTGGCA
FDDITEIGKVCRQVSSIWLHVDGAYAGNSFILPEMRVFSAGLEYADSFNT
NPNKLLLTNFDASALWVRDVMNLKSALNVNPLYLRHEHLTGVDYRHYGIP
LSRRFRALKLWFVFRTYGIRGLQEYIRNHMALAKKFEMLVRKDERFEVRN
DVHLGLVCFRMRTGDEPNHMLLAQINHSGKMHMTPAKFNGRYVIRFCVTY
EHATEKDILEAWTQIKCFAEEILRDHQLESSSVPTTPEGSERTSSEPLAP
VAGKPPIKKRLTRTKSLRFSFTRSISREQYQSQSEHLMDGCTPILVVDPK
TLQENFQKAADDNDRNNSNGNVKLKDISDVDTDEASN*
BS22559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tdc1-PA | 587 | CG30445-PA | 1..587 | 1..587 | 3066 | 100 | Plus |
| Tdc2-PA | 637 | CG30446-PA | 1..484 | 1..482 | 1456 | 56.8 | Plus |
| Hdc-PC | 619 | CG3454-PC | 1..510 | 1..500 | 1239 | 48.5 | Plus |
| Hdc-PD | 847 | CG3454-PD | 1..510 | 1..500 | 1239 | 48.5 | Plus |
| Hdc-PB | 847 | CG3454-PB | 1..510 | 1..500 | 1239 | 48.5 | Plus |
