BS22561.complete Sequence
1424 bp assembled on 2011-01-25
GenBank Submission: KX804187
> BS22561.complete
GAAGTTATCAGTCGACATGGCGAACATCTGGCCACGAATCTTGGTCGGAG
CTCTGACCATCCTGGTGGCCGTTGGCTATAAGAACTATCGCGATCTCTCG
GCGCCCGGCAAGAGACCCGATCTGGACAACAACGCCTACTGGGGTCCAAC
ATTGAAGGAACCTTATCGGGAGAACAAGGCCATCCTACCCTTCGACATCA
GCGTAAAGCCAGAGGTTATTGAGGATCTAATCGGTCAGCTGAGTCGTCCT
TTGAAAGCGCAGGCGCCACTGGAGGGTGTGGGTTTCCAATACGGATTCAA
TGCCAACGAACTGGCCAAGGTGGTGAAATACTGGCGCGATACATATCTGC
CCAAATGGAGCGAACGGGAGGAGTACCTCAAGAAGCTGGATCACTACCAA
ACGGAAATTCAGGGTTTAAAAATTCATTTTATTCATGCCAAGCCAAGCCA
GGTGAAAGGCCAAAAGCCCAAGAAGGTGCTGCCTCTGCTTCTGATGCACG
GATGGCCGGGAACCGTTCGCGAATTCTACGACTTCATCCCTCTCCTGACC
ACGCCCAGTGACAAGAGCGACTACGTCTTCGAGGTTATTGCACCCAGTCT
GCCCGGCTACGGATGGTCTCAGGGCTCTTCAAAAACTGGATTCGGTGTGG
CGCAAGTGGCGGTGGTGATGCGCAACCTGATGCTCCGAGTGGGATTCGAT
AAGTTTCTGGTGCAGGGTGGCGATTGGGGTTCCATAATTGGATCCAATGT
AGCCTCACTTTTTCCGGAAAACGTGCTGGGCTATCATTCTAATATGTGCG
GAAATAACAGCCCTATGGGTCAGTTGAAGATGGTGCTGGCCTCCTTTTTC
CCCAGCTGGTTTGTGGACAGCGAGTATGCGGACTTCTACAAGGGACTCGG
TCACTTGTTTAGCACCATAATGGAGGAGATGGGCTATGCCCACATTCAGG
CCTCCAAGCCAGACACCATCGGCAATGCTTTGATCGACAATCCAACTGGT
CTGGCTAGCTATATTCTGGAGAAGTTCTCCACATGGACGAATACGGCATT
TAGATCGCTTCCTGACGGTGGTCTGACCAAGAGATTTACCTACGATCAGC
TTCTGGACAATGTGATGATCTATTATGTGACCAACTCCATTACCACCTCC
ATGCGTCTGTATTCCGAATCAATGGTTGCCTCGCAGTTTGCACTGGCCGT
GGACTCCGTGCCCATCAAGGCCAAGGCTGGCTGCACCCGTTTCGCCCATG
AGATCACACATTTCTCCGACTCGGTTTTGGCCAACAAGTTCCCCAATCTG
GTGCACAGTACCCACCACCGGGATGGAGGTCACTTTCCCGCTTTTGAGCT
GCCCCAGCAGCTGTACGACGACTTTGTGTCTTTTGTCCAGAAAGCCAATT
TCTCATAAAAGCTTTCTAGACCAT
BS22561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jheh2-RD | 1392 | CG15102-PD | 1..1392 | 17..1408 | 6960 | 100 | Plus |
| Jheh2-RA | 1392 | CG15102-PA | 1..1392 | 17..1408 | 6960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jheh2-RD | 1926 | CG15102-RD | 396..1789 | 17..1410 | 6970 | 100 | Plus |
| Jheh2-RA | 1621 | CG15102-RA | 91..1484 | 17..1410 | 6970 | 100 | Plus |
| Jheh1-RA | 1486 | CG15101-RA | 951..1200 | 918..1167 | 230 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18855904..18856694 | 1410..620 | 3955 | 100 | Minus |
| 2R | 25286936 | 2R | 18856883..18857092 | 623..414 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 18857204..18857405 | 414..213 | 1010 | 100 | Minus |
| 2R | 25286936 | 2R | 18857651..18857850 | 216..17 | 1000 | 100 | Minus |
| 2R | 25286936 | 2R | 18853720..18853969 | 1167..918 | 230 | 72.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:01:51 has no hits.
BS22561.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:52 Download gff for
BS22561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh2-RA | 89..1478 | 17..1406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:05 Download gff for
BS22561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh2-RA | 91..1480 | 17..1406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:00 Download gff for
BS22561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh2-RA | 91..1480 | 17..1406 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:00 Download gff for
BS22561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18857653..18857850 | 17..214 | 100 | | Minus |
| 2R | 18855908..18856691 | 623..1406 | 100 | <- | Minus |
| 2R | 18856884..18857091 | 415..622 | 100 | <- | Minus |
| 2R | 18857204..18857403 | 215..414 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:05 Download gff for
BS22561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14743413..14744196 | 623..1406 | 100 | <- | Minus |
| arm_2R | 14744389..14744596 | 415..622 | 100 | <- | Minus |
| arm_2R | 14744709..14744908 | 215..414 | 100 | <- | Minus |
| arm_2R | 14745158..14745355 | 17..214 | 100 | | Minus |
BS22561.pep Sequence
Translation from 16 to 1407
> BS22561.pep
MANIWPRILVGALTILVAVGYKNYRDLSAPGKRPDLDNNAYWGPTLKEPY
RENKAILPFDISVKPEVIEDLIGQLSRPLKAQAPLEGVGFQYGFNANELA
KVVKYWRDTYLPKWSEREEYLKKLDHYQTEIQGLKIHFIHAKPSQVKGQK
PKKVLPLLLMHGWPGTVREFYDFIPLLTTPSDKSDYVFEVIAPSLPGYGW
SQGSSKTGFGVAQVAVVMRNLMLRVGFDKFLVQGGDWGSIIGSNVASLFP
ENVLGYHSNMCGNNSPMGQLKMVLASFFPSWFVDSEYADFYKGLGHLFST
IMEEMGYAHIQASKPDTIGNALIDNPTGLASYILEKFSTWTNTAFRSLPD
GGLTKRFTYDQLLDNVMIYYVTNSITTSMRLYSESMVASQFALAVDSVPI
KAKAGCTRFAHEITHFSDSVLANKFPNLVHSTHHRDGGHFPAFELPQQLY
DDFVSFVQKANFS*
BS22561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jheh2-PD | 463 | CG15102-PD | 1..463 | 1..463 | 2458 | 100 | Plus |
| Jheh2-PA | 463 | CG15102-PA | 1..463 | 1..463 | 2458 | 100 | Plus |
| Jheh1-PA | 474 | CG15101-PA | 6..463 | 7..458 | 1286 | 54.7 | Plus |
| Jheh3-PA | 468 | CG15106-PA | 9..459 | 8..459 | 1121 | 47.2 | Plus |
