BS22562.complete Sequence
1286 bp assembled on 2011-01-25
GenBank Submission: KX806440
> BS22562.complete
GAAGTTATCAGTCGACATGTCATGTATTCGGCTAGCGTCTGCCACCGTTC
TGGCAGGGGTCCGTCCCCCGCCGGCAGCAAGCGGAGGTGGAGCCTTGCGC
CTGTTGACTAAACGGAATCCGGATGCTGCATTCGCACGCCGCCAGTTTGC
TGTAGCGGTTGAAAACGGCGGAGGCAGAAAGAAGCCGAATGGAACTTTCA
AGCTCGCAGTTTTGGGGGCCACCGTAGGCGCGGCCACCGGATCGGTGTAT
ACGATGTACCAGCGGTGGACAGACGGCAGCTCGCACAAAGAGCACGAGGA
GACGAAGCCGACGCGGCTGGACGGGATTCCGGCTGGAGTGCGGATAACCA
AGCGCTATGTCAACCCCAAGGACACGTCCGGTTTGGACATTGTGCTGTTC
CAGTTCCAGACGTGTCCCTTCTGTTGCAAGGTGCGCGCTTTCCTCGACTA
CATGGGCATATCCTATGCGGTGGTCGAAGTGGATGCCGTCCTACGGCAGG
ACATCCGCTGGTCGTCGGTGAAGAAGGTGCCGATGGTGCTCATCCGACAG
CAGGACGGCAAATACGTCCAGATGGTGGACTCAAGTGCCATCATATCCCT
TATAGCCACCCACCTGCAGGACAAGCGCACCGACATCGGCGAGCTGGCAC
AGTTCTATCCGCACACCTCCTTCTTCGACGATGATGGCAAAAAGAAGAAC
GACATATTGAATAAATACTTCCTCATGTACCGCGAGCATACGCCCAAGGG
AGTATCCAAGGAAACGGATGAAACCGATCGCAAGTGGAGAAGCTGGGCCG
ACAGCCACTTGGTGCATCTAATATCGCCCAACTGTTATCAGACCATGGGC
GAGTCCCTAGAGACTTTTGAGTGGTTCTCGCAAGCTGGCGAGTGGGACGT
TCACTTCCCCAAATGGGAGCGCGACCTGATGGTTTACTGTGGTGCCACCG
CCATGTGGGCCATAGCCAAGATGCTGAAGCGCCGTCACGCCCTCAGCGAC
GACGTCAGGTCGCACATGTACGATGCCCTTGACCAGTGGACCACTGAGCT
GAAAAAGAGGAACACGAAATTCATGGGCGGAAAACAGCCAAGTCTGGCTG
ATCTATCGGTTTTCGGCGTGCTTTCAAGCATGGAGGGGTGTCAGACGTTC
AAGGATTGTCTGCAAAACACCAGCATCGGTAAATGGTTTTATGACGTCAA
GGCGTTGGTGGAGAAGAATCGTGGGCAGTTGCAAAGAGAACGTATTGAAA
ACATGGCCGCTATAGCTTAAAAGCTTTCTAGACCAT
BS22562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(P)-RA | 1254 | CG4086-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(P)-RA | 1412 | CG4086-RA | 83..1338 | 17..1272 | 6280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16611363..16612117 | 771..17 | 3775 | 100 | Minus |
| 3L | 28110227 | 3L | 16610886..16611298 | 1184..772 | 2065 | 100 | Minus |
| 3L | 28110227 | 3L | 16610736..16610830 | 1272..1178 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:02:28 has no hits.
BS22562.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:53 Download gff for
BS22562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(P)-RA | 81..1332 | 17..1268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:12 Download gff for
BS22562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(P)-RA | 83..1334 | 17..1268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:10 Download gff for
BS22562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(P)-RA | 83..1334 | 17..1268 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:10 Download gff for
BS22562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16610740..16610829 | 1179..1268 | 100 | <- | Minus |
| 3L | 16610892..16611298 | 772..1178 | 100 | <- | Minus |
| 3L | 16611363..16612117 | 17..771 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:12 Download gff for
BS22562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16603840..16603929 | 1179..1268 | 100 | <- | Minus |
| arm_3L | 16603992..16604398 | 772..1178 | 100 | <- | Minus |
| arm_3L | 16604463..16605217 | 17..771 | 100 | | Minus |
BS22562.pep Sequence
Translation from 16 to 1269
> BS22562.pep
MSCIRLASATVLAGVRPPPAASGGGALRLLTKRNPDAAFARRQFAVAVEN
GGGRKKPNGTFKLAVLGATVGAATGSVYTMYQRWTDGSSHKEHEETKPTR
LDGIPAGVRITKRYVNPKDTSGLDIVLFQFQTCPFCCKVRAFLDYMGISY
AVVEVDAVLRQDIRWSSVKKVPMVLIRQQDGKYVQMVDSSAIISLIATHL
QDKRTDIGELAQFYPHTSFFDDDGKKKNDILNKYFLMYREHTPKGVSKET
DETDRKWRSWADSHLVHLISPNCYQTMGESLETFEWFSQAGEWDVHFPKW
ERDLMVYCGATAMWAIAKMLKRRHALSDDVRSHMYDALDQWTTELKKRNT
KFMGGKQPSLADLSVFGVLSSMEGCQTFKDCLQNTSIGKWFYDVKALVEK
NRGQLQRERIENMAAIA*
BS22562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(P)-PA | 417 | CG4086-PA | 1..417 | 1..417 | 2209 | 100 | Plus |
