Clone BS22563 Report

Search the DGRC for BS22563

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:225
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptSgt1-RA
Protein status:BS22563.pep: full length peptide match
Sequenced Size:569

Clone Sequence Records

BS22563.complete Sequence

569 bp assembled on 2011-01-25

GenBank Submission: KX801677

> BS22563.complete
GAAGTTATCAGTCGACATGTCCGTGCGCCACGACTGGTACCAGTCGGAGA
CCAAGGTGGTCATCACCGTGCTCCTGAAGAACGCCGTCGATAAGAACTAT
GCTGTGGAGATTACCCAGAAGCGAGTCCACATGACGGCGGATGGCTACGA
GTTGGACCTGAAGCTGCTTCATCCCATTGTTGTGGAGCGTTCCTCCTACA
AGGCCTTTTCGACCAAAGTGGAAATCACACTGGCTAAGGAGACGGGAATT
CGGTGGGAGAATCTGGAGGAGGCCATCGTGGCTGCACCGGTGAAACCCAA
GGCCAAGAACTGGGACCAGCTGGTCAGCGAGGAGGAAAAGATCGACGAGA
AGGAGGCCAAGGGCGAGGCGGCCCTCACCAACCTGTTCAAGAAAATCTAC
AGCTCATCCTCGCCCGAGGTCCAAAAGGCCATGAACAAGTCCTTCTCGGA
GTCCGGAGGCACCGTGCTCAGCACCAACTGGAATGAGGTGGGCAAAGAAA
GAGTCACCGTGAAGCCTCCAAATGGAACCGAGTTCCGCGAGTGGGAGAAG
TAGAAGCTTTCTAGACCAT

BS22563.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt1-RA 537 CG9617-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt1-RA 1085 CG9617-RA 153..689 17..553 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8304586..8305122 553..17 2685 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:02:48 has no hits.

BS22563.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:53 Download gff for BS22563.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt1-RA 158..694 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:16 Download gff for BS22563.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt1-RA 153..689 17..553 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:17 Download gff for BS22563.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt1-RA 153..689 17..553 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:17 Download gff for BS22563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8304586..8305122 17..553 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:16 Download gff for BS22563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4130308..4130844 17..553 100   Minus

BS22563.pep Sequence

Translation from 16 to 552

> BS22563.pep
MSVRHDWYQSETKVVITVLLKNAVDKNYAVEITQKRVHMTADGYELDLKL
LHPIVVERSSYKAFSTKVEITLAKETGIRWENLEEAIVAAPVKPKAKNWD
QLVSEEEKIDEKEAKGEAALTNLFKKIYSSSSPEVQKAMNKSFSESGGTV
LSTNWNEVGKERVTVKPPNGTEFREWEK*

BS22563.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt1-PA 178 CG9617-PA 1..178 1..178 912 100 Plus