BS22572.complete Sequence
995 bp assembled on 2011-01-25
GenBank Submission: KX803056
> BS22572.complete
GAAGTTATCAGTCGACATGTCGAAAGTGACGCAAAGTGCTGACAACGGCA
GCAACGCCAACAGCAATGACATCTACAACATTGTCCTGCTGGTGGTTGAC
ATCGTGATGCTGATCGTCAAATTCTGGCTCGCCATTGCGGAAGCTATCGT
TGGACTTTTCCGCGCGCCGCCGCTCGATGATGTCAATGGCAAGGTGGTCC
TGATCACCGGCACTGGCCACGGCATGGGCAAGGAGATGGCACTGCAGTAC
GCCAAGCTGGGCGCCACCATTCTCTGCTGGGATGTCAATGAGCAGACCAA
TAACCAGACCGTCAAGGAGATCAAGAACAATGGTGGCAAGGCCTTTGGCT
ACGTTTGCAATGTGACCAAGCGCGAGGAACTGATCGAACTGGCCCAGAAG
GTGCGCAAGGAGCATGGATTCATTCATGTGGTGGTCAACAATGCCGGCAT
CATGCCCTGCCATCCACTGCTGGAGCATACCGAGAACGAGATTCGTCTAA
TGTACGAGATCAATGTGCTCTCTCACTTCTGGATCATCCAGGCGTTCCTG
CCCGATATGATTGAGCGCAACGAGGGCAGCATTGTGGCCCTATCCTCATG
CGCCGGACTCTTTGGACTGATCAATCTGGTGCCCTATTGCGGCACCAAGT
TCGCCGTTCGTGGCTACATGGCCGCCCTCGTTGAGGAGCTGCGTCAGAAG
AACCCACAGAACAACGTCAAGCTGACTACCATATATCCGTATATGATCGA
TACGGGTCTGTGCAAGAATCCCCGCTACCGATTCCCCAATCTGTTCAAGC
TGATACCCGCCGATGTGGCCGCCGGATCGATCATCGAGGCTCAGCGCCAG
GGATTGGAGGAGGCGGCGATTCCACGACATTTCGTGGCCGCTGAGAAGAT
CGGTCGCCTGATTCCACGCAAGGCGATGCGATTGGTCAACGATTTCTTCG
ACACGGGTGTGGATACCGATAAGTCCTAGAAGCTTTCTAGACCAT
BS22572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2254-RA | 963 | CG2254-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2254-RA | 1404 | CG2254-RA | 155..1120 | 15..980 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8079427..8079924 | 532..35 | 2490 | 100 | Minus |
| X | 23542271 | X | 8078634..8078898 | 980..716 | 1325 | 100 | Minus |
| X | 23542271 | X | 8079168..8079353 | 717..532 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:01:18 has no hits.
BS22572.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:51 Download gff for
BS22572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2254-RA | 154..1116 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:58 Download gff for
BS22572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2254-RA | 157..1119 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:52 Download gff for
BS22572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2254-RA | 157..1119 | 17..979 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:52 Download gff for
BS22572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8078635..8078898 | 716..979 | 100 | <- | Minus |
| X | 8079170..8079352 | 533..715 | 100 | <- | Minus |
| X | 8079427..8079922 | 37..532 | 100 | <- | Minus |
| X | 8081430..8081449 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:58 Download gff for
BS22572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7972668..7972931 | 716..979 | 100 | <- | Minus |
| arm_X | 7973203..7973385 | 533..715 | 100 | <- | Minus |
| arm_X | 7973460..7973955 | 37..532 | 100 | <- | Minus |
| arm_X | 7975463..7975482 | 17..36 | 100 | | Minus |
BS22572.pep Sequence
Translation from 16 to 978
> BS22572.pep
MSKVTQSADNGSNANSNDIYNIVLLVVDIVMLIVKFWLAIAEAIVGLFRA
PPLDDVNGKVVLITGTGHGMGKEMALQYAKLGATILCWDVNEQTNNQTVK
EIKNNGGKAFGYVCNVTKREELIELAQKVRKEHGFIHVVVNNAGIMPCHP
LLEHTENEIRLMYEINVLSHFWIIQAFLPDMIERNEGSIVALSSCAGLFG
LINLVPYCGTKFAVRGYMAALVEELRQKNPQNNVKLTTIYPYMIDTGLCK
NPRYRFPNLFKLIPADVAAGSIIEAQRQGLEEAAIPRHFVAAEKIGRLIP
RKAMRLVNDFFDTGVDTDKS*
BS22572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2254-PA | 320 | CG2254-PA | 1..320 | 1..320 | 1658 | 100 | Plus |
| CG14946-PE | 318 | CG14946-PE | 13..316 | 16..318 | 684 | 44.1 | Plus |
| CG14946-PC | 318 | CG14946-PC | 13..316 | 16..318 | 684 | 44.1 | Plus |
| CG14946-PD | 318 | CG14946-PD | 13..316 | 16..318 | 684 | 44.1 | Plus |
| CG15629-PA | 325 | CG15629-PA | 17..297 | 22..302 | 390 | 31.2 | Plus |
