Clone BS22574 Report

Search the DGRC for BS22574

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:225
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptspn-B-RA
Protein status:BS22574.pep: full length peptide match
Sequenced Size:1058

Clone Sequence Records

BS22574.complete Sequence

1058 bp assembled on 2011-01-25

GenBank Submission: KX802956

> BS22574.complete
GAAGTTATCAGTCGACATGACAAACTTTCTGGATCAATTGCCCAAGCATA
TCAGAGAAATCGCCGAGCAGGTTAATGTTCTCGCACCGGAGGAGGTGCTG
ACAACTCCCAAGGTGCGATTCCTGGACACCCGCCAGCAATCGCTGCACAC
AATCGTGCGAAAATGCACTCCGGATGATGTTAGGGTGCTCAAGGATGCGG
CAGCCAAGTGGCTGGCAGAGATGCCCCAGTCAGCGGATTCCCTCTTCAAG
CCGCTTGTCAATGTTAGATGGTCGCGGGTGTCGTTTGGATGTTCCGCTTT
AGATCGCTGCACGGGCGGGGGAGTGGTCACTCGTGGAATTACAGAGCTAT
GTGGAGCAGCCGGCGTGGGCAAGACCCAGTTGCTTCTTCAGCTATCCCTT
TGTGTCCAGCTACCCCGTGAGTTGGGTGGCTTGGGCAAAGGCGTGGCCTA
CATATGCACGGAGAGTTCCTTTCCGGCGAGAAGATTGCTGCAGATGAGCA
AAGCCTGCGAGAAGAGGCATCCCGAAATGGAGCTGAATTTTCTGGGAAAC
ATCTTTGTGGAAAATCACATTGAGGCAGAACCTCTCCTGGCGTGCGTTAT
AAACCGCATTCCGCGACTGATGCAACAACATGGCATTGGCCTGATCATTA
TTGATTCTGTGGCCGCCATATTCCGGCTGTATAATGATTATCTGGAACGA
GCGAGACATATGCGTCGACTGGCAGACGCTCTGCTCAGCTACGCGGATAA
GTACAACTGTGCCGTGGTCTGTGTGAATCAGGTGGCCACCAGGGACGGTC
AGGATGAGATTCCCTGCTTGGGATTGCAGTGGGCGCACCTAGGACGCACT
AGACTGCGTGTTTCCCGGGTGCCCAAGCAGCATCGCATGGGTGATCAACT
GATAACGGTGCGCAAACTGGAAATACTTTACTCACCAGAGACTCCCAATG
ATTTCGCCGAGTTTCTTATCACCGCAGAAGGTGTGGTCAATGTTCCAGAG
CCATCTGTTCCCAGCCCACCCGCCAAAATGCGTCGACTGTGAAAGCTTTC
TAGACCAT

BS22574.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
spn-B-RA 1026 CG3325-PA 1..1026 17..1042 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
spn-B-RA 1384 CG3325-RA 161..1186 17..1042 5130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14328946..14329410 578..1042 2325 100 Plus
3R 32079331 3R 14328546..14328893 231..578 1740 100 Plus
3R 32079331 3R 14328325..14328494 71..240 820 98.8 Plus
3R 32079331 3R 14328211..14328269 17..75 280 98.3 Plus
Blast to na_te.dros performed on 2014-11-26 15:04:47 has no hits.

BS22574.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:57 Download gff for BS22574.complete
Subject Subject Range Query Range Percent Splice Strand
spn-B-RA 148..1172 17..1041 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:53 Download gff for BS22574.complete
Subject Subject Range Query Range Percent Splice Strand
spn-B-RA 161..1185 17..1041 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:06 Download gff for BS22574.complete
Subject Subject Range Query Range Percent Splice Strand
spn-B-RA 161..1185 17..1041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:06 Download gff for BS22574.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14328211..14328265 17..71 100 -> Plus
3R 14328326..14328487 72..233 100 -> Plus
3R 14328549..14328892 234..577 100 -> Plus
3R 14328946..14329409 578..1041 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:53 Download gff for BS22574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10153933..10153987 17..71 100 -> Plus
arm_3R 10154048..10154209 72..233 100 -> Plus
arm_3R 10154271..10154614 234..577 100 -> Plus
arm_3R 10154668..10155131 578..1041 100   Plus

BS22574.pep Sequence

Translation from 16 to 1041

> BS22574.pep
MTNFLDQLPKHIREIAEQVNVLAPEEVLTTPKVRFLDTRQQSLHTIVRKC
TPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVSFGCSALDRCTG
GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTES
SFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPR
LMQQHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAV
VCVNQVATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRK
LEILYSPETPNDFAEFLITAEGVVNVPEPSVPSPPAKMRRL*

BS22574.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
spn-B-PA 341 CG3325-PA 1..341 1..341 1768 100 Plus
spn-D-PA 270 CG31069-PA 44..255 86..289 188 28.8 Plus
spn-A-PB 279 CG7948-PB 41..278 87..328 185 30.9 Plus
spn-A-PA 336 CG7948-PA 98..335 87..328 185 30.9 Plus