BS22574.complete Sequence
1058 bp assembled on 2011-01-25
GenBank Submission: KX802956
> BS22574.complete
GAAGTTATCAGTCGACATGACAAACTTTCTGGATCAATTGCCCAAGCATA
TCAGAGAAATCGCCGAGCAGGTTAATGTTCTCGCACCGGAGGAGGTGCTG
ACAACTCCCAAGGTGCGATTCCTGGACACCCGCCAGCAATCGCTGCACAC
AATCGTGCGAAAATGCACTCCGGATGATGTTAGGGTGCTCAAGGATGCGG
CAGCCAAGTGGCTGGCAGAGATGCCCCAGTCAGCGGATTCCCTCTTCAAG
CCGCTTGTCAATGTTAGATGGTCGCGGGTGTCGTTTGGATGTTCCGCTTT
AGATCGCTGCACGGGCGGGGGAGTGGTCACTCGTGGAATTACAGAGCTAT
GTGGAGCAGCCGGCGTGGGCAAGACCCAGTTGCTTCTTCAGCTATCCCTT
TGTGTCCAGCTACCCCGTGAGTTGGGTGGCTTGGGCAAAGGCGTGGCCTA
CATATGCACGGAGAGTTCCTTTCCGGCGAGAAGATTGCTGCAGATGAGCA
AAGCCTGCGAGAAGAGGCATCCCGAAATGGAGCTGAATTTTCTGGGAAAC
ATCTTTGTGGAAAATCACATTGAGGCAGAACCTCTCCTGGCGTGCGTTAT
AAACCGCATTCCGCGACTGATGCAACAACATGGCATTGGCCTGATCATTA
TTGATTCTGTGGCCGCCATATTCCGGCTGTATAATGATTATCTGGAACGA
GCGAGACATATGCGTCGACTGGCAGACGCTCTGCTCAGCTACGCGGATAA
GTACAACTGTGCCGTGGTCTGTGTGAATCAGGTGGCCACCAGGGACGGTC
AGGATGAGATTCCCTGCTTGGGATTGCAGTGGGCGCACCTAGGACGCACT
AGACTGCGTGTTTCCCGGGTGCCCAAGCAGCATCGCATGGGTGATCAACT
GATAACGGTGCGCAAACTGGAAATACTTTACTCACCAGAGACTCCCAATG
ATTTCGCCGAGTTTCTTATCACCGCAGAAGGTGTGGTCAATGTTCCAGAG
CCATCTGTTCCCAGCCCACCCGCCAAAATGCGTCGACTGTGAAAGCTTTC
TAGACCAT
BS22574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-B-RA | 1026 | CG3325-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-B-RA | 1384 | CG3325-RA | 161..1186 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14328946..14329410 | 578..1042 | 2325 | 100 | Plus |
3R | 32079331 | 3R | 14328546..14328893 | 231..578 | 1740 | 100 | Plus |
3R | 32079331 | 3R | 14328325..14328494 | 71..240 | 820 | 98.8 | Plus |
3R | 32079331 | 3R | 14328211..14328269 | 17..75 | 280 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:04:47 has no hits.
BS22574.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:57 Download gff for
BS22574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-B-RA | 148..1172 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:53 Download gff for
BS22574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-B-RA | 161..1185 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:06 Download gff for
BS22574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-B-RA | 161..1185 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:06 Download gff for
BS22574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14328211..14328265 | 17..71 | 100 | -> | Plus |
3R | 14328326..14328487 | 72..233 | 100 | -> | Plus |
3R | 14328549..14328892 | 234..577 | 100 | -> | Plus |
3R | 14328946..14329409 | 578..1041 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:53 Download gff for
BS22574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10153933..10153987 | 17..71 | 100 | -> | Plus |
arm_3R | 10154048..10154209 | 72..233 | 100 | -> | Plus |
arm_3R | 10154271..10154614 | 234..577 | 100 | -> | Plus |
arm_3R | 10154668..10155131 | 578..1041 | 100 | | Plus |
BS22574.pep Sequence
Translation from 16 to 1041
> BS22574.pep
MTNFLDQLPKHIREIAEQVNVLAPEEVLTTPKVRFLDTRQQSLHTIVRKC
TPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVSFGCSALDRCTG
GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTES
SFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPR
LMQQHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAV
VCVNQVATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRK
LEILYSPETPNDFAEFLITAEGVVNVPEPSVPSPPAKMRRL*
BS22574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-B-PA | 341 | CG3325-PA | 1..341 | 1..341 | 1768 | 100 | Plus |
spn-D-PA | 270 | CG31069-PA | 44..255 | 86..289 | 188 | 28.8 | Plus |
spn-A-PB | 279 | CG7948-PB | 41..278 | 87..328 | 185 | 30.9 | Plus |
spn-A-PA | 336 | CG7948-PA | 98..335 | 87..328 | 185 | 30.9 | Plus |