BS22575.complete Sequence
1301 bp assembled on 2011-01-25
GenBank Submission: KX803155
> BS22575.complete
GAAGTTATCAGTCGACATGACGGCAACCAAGCAGCAAGAGGCTGAGGCCG
AACATGATCCCCAAGTGGTGGTCACCCCTGGAGACGCCTCTCGCAGCTCT
CGCCAAGATCGGGGTCTATGGCGGGATCTTACTTCCTACTGGATCCTCGG
TCTGTGCAACAACTACGGATACGTGGTGATGCTGAGTGCTGCGCACGATA
TTATCAAGCAGTTTAATCCGAATGATGAATCGGAAGAAAGCTCGTCGGGA
AGAAACTGTCACTTGGTTTCAACAGGTGCCATCTTGCTGGCAGACGTGCT
GCCCTCATTATTTGTCAAGATTCTAATGCCATTCTTTCCATTTTGGGTGA
ATTTCCGTATAGCTCTTGCCGTGGCCTTTTCTGCAGCTGGTTTCCTCCTG
GTTGGATTCGCCAATGCCGAATGGATGGCTCTTTTGGGTGTCATCATCAC
TTCGGCTAGCAGCGGAATAGGAGAAACCACTTTCTTGGCCTATTCTTCGC
GATACAATAAGAATGTGATCTCCACTTGGTCGTCCGGAACTGGTGGCGCT
GGAGTTATCGGATCCTTGAGCTATGCTAGCTTGAGATCCTTAGACTTCAG
TCCCAGAGATACTATGCTGATTATGCTGATCTTCCCTGCGATCGAGGCCT
TTGCATTCTGGTTGCTGCTTCGTCGTCCACAAGTTGATATATTGCCGGTT
ACCACGGTTGAGTCCACGGAAGTCCTGATCAGCGATGAGAAGCCATTAGT
TGGGTTCAAGGAAAAGCTCTTCTATATCAAGCACCTCTTCAAATATATGT
TGCCCCTTTGCCTGGTTTACTTCTTCGAATACTTCATCAATCAAGGATTG
TTCGAACTGGTTTACTTTGAAGATATATTCCTGGACAAGGACTCGCAGTA
CCGCTGGCTAAATGTGGACTATCAGATCGGAGTCTTTATCTCGCGCTCCT
CTGTCAATCTCTTCCAGCTGGACAAGATCTGGCTGATGTCCATCTTCCAG
TTCGTCAACGTGGTATACTTCCTCACCGAGGTTATCTGGTGGTACACGCC
TAGCATCTGGATCGTGTTCGCCATCGTCCTGTGGGAGGGACTTCTGGGCG
GCGGTGCTTACGTGAACACCTTCTATCGGATGTCCAAGGAGATTTCGCCG
GAGCGCCAGCAGTTCGCCATGGCCATGGTGGTACAGTCGGACTCCTATGG
CATTGCTCTGGCCGGATTTCTGGCCATTCCCGTGCACAACGCCATCTGTG
GTCTTCCGGCCGCGGCCAGAAGCCTTGTTTGGTGAAAGCTTTCTAGACCA
T
BS22575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cln3-RB | 1269 | CG5582-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
| cln3-RA | 1269 | CG5582-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cln3-RB | 1589 | CG5582-RB | 107..1375 | 17..1285 | 6345 | 100 | Plus |
| cln3-RA | 1553 | CG5582-RA | 71..1339 | 17..1285 | 6345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17809445..17809880 | 1285..850 | 2180 | 100 | Minus |
| 3L | 28110227 | 3L | 17809937..17810276 | 850..511 | 1700 | 100 | Minus |
| 3L | 28110227 | 3L | 17810786..17810989 | 220..17 | 1020 | 100 | Minus |
| 3L | 28110227 | 3L | 17810335..17810494 | 511..352 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 17810583..17810714 | 351..220 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:04:51 has no hits.
BS22575.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:58 Download gff for
BS22575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 63..1330 | 17..1284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:54 Download gff for
BS22575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 71..1338 | 17..1284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:08 Download gff for
BS22575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 71..1338 | 17..1284 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:08 Download gff for
BS22575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17809446..17809879 | 851..1284 | 100 | <- | Minus |
| 3L | 17809937..17810276 | 511..850 | 100 | <- | Minus |
| 3L | 17810336..17810494 | 352..510 | 100 | <- | Minus |
| 3L | 17810583..17810713 | 221..351 | 100 | <- | Minus |
| 3L | 17810786..17810989 | 17..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:54 Download gff for
BS22575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17802546..17802979 | 851..1284 | 100 | <- | Minus |
| arm_3L | 17803037..17803376 | 511..850 | 100 | <- | Minus |
| arm_3L | 17803436..17803594 | 352..510 | 100 | <- | Minus |
| arm_3L | 17803683..17803813 | 221..351 | 100 | <- | Minus |
| arm_3L | 17803886..17804089 | 17..220 | 100 | | Minus |
BS22575.pep Sequence
Translation from 16 to 1284
> BS22575.pep
MTATKQQEAEAEHDPQVVVTPGDASRSSRQDRGLWRDLTSYWILGLCNNY
GYVVMLSAAHDIIKQFNPNDESEESSSGRNCHLVSTGAILLADVLPSLFV
KILMPFFPFWVNFRIALAVAFSAAGFLLVGFANAEWMALLGVIITSASSG
IGETTFLAYSSRYNKNVISTWSSGTGGAGVIGSLSYASLRSLDFSPRDTM
LIMLIFPAIEAFAFWLLLRRPQVDILPVTTVESTEVLISDEKPLVGFKEK
LFYIKHLFKYMLPLCLVYFFEYFINQGLFELVYFEDIFLDKDSQYRWLNV
DYQIGVFISRSSVNLFQLDKIWLMSIFQFVNVVYFLTEVIWWYTPSIWIV
FAIVLWEGLLGGGAYVNTFYRMSKEISPERQQFAMAMVVQSDSYGIALAG
FLAIPVHNAICGLPAAARSLVW*
BS22575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cln3-PB | 422 | CG5582-PB | 1..422 | 1..422 | 2191 | 100 | Plus |
| cln3-PA | 422 | CG5582-PA | 1..422 | 1..422 | 2191 | 100 | Plus |
