BS22578.complete Sequence
2060 bp assembled on 2011-02-18
GenBank Submission: KX805716
> BS22578.complete
GAAGTTATCAGTCGACATGGCTGCCACCAAAATCATAGATGCGCCGCGCA
ACGGCCACGAGATGGCGCCGCTGAACACACGGGCACGGGGCGATGGAACC
CACGGGGTGACCATCGTCCTTACCGCCCCCCAGCGCAACTCCGTGCAATC
GGTGGACATTCCGGGCAATGAGCCGGAACGCGCCGCCTGGAGCGGCAAGA
TGCAGTTCTTCCTCAGCATCATCGGATACTCGGTGGGCCTCGGCAATATC
TGGCGGTTTCCCTACCTTTGCCAACAGAATGGAGGCGGTGCATTCCTGAT
ACCCTTTATGGTTATGCTGATACTGGAGGGCATACCGCTGTTCCTAATCG
AGTTGGGAATCGGGCAGAGAATGCGATTGGGTGCCTTGGGTGTGTGGAAC
ACCATCCATCCCTGGCTGGGTGGCATCGGAATCTCGTCGTGCATAGTGAC
GCTATTTGTGGCTCTCTATTACAACGTGATCATCACGTGGGTTTTCTTCT
ACCTTTTCAACAGTTTTCGGTATCCGCTGCCCTGGTCATCTTGTCCATTG
AACGGCACAGGATTTGAGTTGGAGGAGTGCGCCAAATCCTCGGAGACGAC
GTACTTCTGGTACCGCACCACCTTGGATGCGGCACCGTCCATGGATGAGC
CTGGTGGCCTCAAGTGGTGGATCGTGCTCTGCCTGATGCTGTCCTGGACC
ATTGTCTTCTTCATCGTAATGAAGGGCATCCAGAGCTCCGGCAAGGTTGT
CTACTTCACCTCGCTCTTTCCCTACATTGTGCTGACCATCTTCTTCATTC
GCGGCATCACGTTGAGAGGAGCGGGCGCTGGACTGATGCACATGTATACG
CCAAAGGTGGAAAAATTACTGGAGCCCACCGTTTGGCTGGATGCAGCCAC
ACAGGTCTTTTACTCCTTTGGCCTGGCCTTTGGATCCCTGATCGCCTTCG
GGAGCTACAACACGCCGAAGAACAACTGCGTGCGGGATGTGCTCCTGGTG
TCCGTGTGCAATGCAGTTACGGCTATCTACGCCAGCGTGGTCATCTTCGC
CATTCTGGGCTTCAAGGCCACCGTCAATGTGGACCGTTGTGTAGCCAGTA
ACACGGAAATCCTGGTGAAAAACAAACTGCTGGGCCTGAATGACACACAG
GGCTACGAGCAAGCCATGAGTCTACTGAATGGCACTGAGTTGCTCCGCCT
GCAATTGAGCGAATGCAGCTTGGCCCACGAACTGGACAATGCTGCCGAGG
GCACCGGTTTGGCCTTCATCGTATTCACCCAGGCCATCGTGGAGCTGCCC
GGTGCTCCATTCTGGGCCGTCCTTTTCTTCACCATGCTGCTGTCGCTGGG
ACTGGGATCACAGATCGGCATCCTGGAGGGCATGCTGTGCACCCTCTTCG
ACATTGACATTATCAAGCGGGTTAAGAAACAGCATGTCACTGGCGTGGTG
TGTCTCTTCTGCTTCATTGTCGGTTTCATCTTCTGCACAGGTGCCGGGGA
GTACTGGCTCAAGATGTTCGACTCTTTTGCCGGCACCATTGGTCTCGTGG
TGGTGGCGCTGATGGAGATGATAGCCGTGATCTTTATCTACGGACACGAG
CGCTTCACCGAGGACATTTTCCAGATGACTGGCTACCGACCTGGTCGTTA
CTGGCAGTGGACCTGGCGGTACATTGGTCCCGTCATTATGGTCTGCATCT
TGGTGTCTTCAGTGGTCTTCATGGTCATTAGAAATCCAACTTACGGTGCT
TGGAATGCCGATTTGGGTATGATTGAGCAGAAGAGCTACCCCAATTGGGT
GATGGGCATCGCACTATCCATGATCCTGGCTGGCGTCCTGCCCATGCCCA
TCGTGTTCCTCATGCGCAGCTTCCAGTGCCTGAAGGTGGACCTGGACATC
CACCAAGGATCGATTCGTCGCAATGAAACAACCGCCTCCACCAAGGAGAT
GATTGACAATGATGACGATAATATGAGTCCGGATATGCCACCGCAAGATT
CACTAGCGGCGACACGCTTCACAATTGGAGACTTTGAAAATTAGAAGCTT
TCTAGACCAT
BS22578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43066-RA | 2028 | CG43066-PA | 1..2028 | 17..2044 | 10140 | 100 | Plus |
| CG43066-RC | 2166 | CG43066-PC | 1..1953 | 17..1969 | 9765 | 100 | Plus |
| CG5549-RB | 3567 | CG5549-PB | 212..296 | 222..306 | 185 | 81.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43066-RA | 4033 | CG43066-RA | 313..2342 | 17..2046 | 10150 | 100 | Plus |
| CG43066-RC | 4472 | CG43066-RC | 313..2265 | 17..1969 | 9765 | 100 | Plus |
| CG5549-RB | 6361 | CG5549-RB | 482..566 | 222..306 | 185 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18520717..18521295 | 520..1098 | 2895 | 100 | Plus |
| 2R | 25286936 | 2R | 18521856..18522217 | 1241..1602 | 1810 | 100 | Plus |
| 2R | 25286936 | 2R | 18519182..18519454 | 17..289 | 1365 | 100 | Plus |
| 2R | 25286936 | 2R | 18520427..18520660 | 287..520 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 18522516..18522720 | 1765..1969 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 18522280..18522444 | 1602..1766 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 18521644..18521789 | 1096..1241 | 730 | 100 | Plus |
| 2R | 25286936 | 2R | 18522973..18523041 | 1970..2038 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:33:00 has no hits.
BS22578.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:50 Download gff for
BS22578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43066-RA | 311..2338 | 17..2044 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:38 Download gff for
BS22578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43066-RA | 313..2340 | 17..2044 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:41 Download gff for
BS22578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43066-RA | 313..2340 | 17..2044 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:41 Download gff for
BS22578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18522517..18522720 | 1766..1969 | 100 | -> | Plus |
| 2R | 18522973..18523046 | 1970..2044 | 96 | | Plus |
| 2R | 18519182..18519452 | 17..287 | 100 | -> | Plus |
| 2R | 18520428..18520660 | 288..520 | 100 | -> | Plus |
| 2R | 18520718..18521295 | 521..1098 | 100 | -> | Plus |
| 2R | 18521647..18521788 | 1099..1240 | 100 | -> | Plus |
| 2R | 18521856..18522217 | 1241..1602 | 100 | -> | Plus |
| 2R | 18522281..18522443 | 1603..1765 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:38 Download gff for
BS22578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14406687..14406957 | 17..287 | 100 | -> | Plus |
| arm_2R | 14407933..14408165 | 288..520 | 100 | -> | Plus |
| arm_2R | 14408223..14408800 | 521..1098 | 100 | -> | Plus |
| arm_2R | 14409152..14409293 | 1099..1240 | 100 | -> | Plus |
| arm_2R | 14409361..14409722 | 1241..1602 | 100 | -> | Plus |
| arm_2R | 14409786..14409948 | 1603..1765 | 100 | -> | Plus |
| arm_2R | 14410022..14410225 | 1766..1969 | 100 | -> | Plus |
| arm_2R | 14410478..14410551 | 1970..2044 | 96 | | Plus |
BS22578.pep Sequence
Translation from 16 to 2043
> BS22578.pep
MAATKIIDAPRNGHEMAPLNTRARGDGTHGVTIVLTAPQRNSVQSVDIPG
NEPERAAWSGKMQFFLSIIGYSVGLGNIWRFPYLCQQNGGGAFLIPFMVM
LILEGIPLFLIELGIGQRMRLGALGVWNTIHPWLGGIGISSCIVTLFVAL
YYNVIITWVFFYLFNSFRYPLPWSSCPLNGTGFELEECAKSSETTYFWYR
TTLDAAPSMDEPGGLKWWIVLCLMLSWTIVFFIVMKGIQSSGKVVYFTSL
FPYIVLTIFFIRGITLRGAGAGLMHMYTPKVEKLLEPTVWLDAATQVFYS
FGLAFGSLIAFGSYNTPKNNCVRDVLLVSVCNAVTAIYASVVIFAILGFK
ATVNVDRCVASNTEILVKNKLLGLNDTQGYEQAMSLLNGTELLRLQLSEC
SLAHELDNAAEGTGLAFIVFTQAIVELPGAPFWAVLFFTMLLSLGLGSQI
GILEGMLCTLFDIDIIKRVKKQHVTGVVCLFCFIVGFIFCTGAGEYWLKM
FDSFAGTIGLVVVALMEMIAVIFIYGHERFTEDIFQMTGYRPGRYWQWTW
RYIGPVIMVCILVSSVVFMVIRNPTYGAWNADLGMIEQKSYPNWVMGIAL
SMILAGVLPMPIVFLMRSFQCLKVDLDIHQGSIRRNETTASTKEMIDNDD
DNMSPDMPPQDSLAATRFTIGDFEN*
BS22578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43066-PA | 675 | CG5226-PA | 1..675 | 1..675 | 3560 | 100 | Plus |
| CG43066-PC | 721 | CG43066-PC | 1..656 | 1..656 | 3435 | 99.4 | Plus |
| CG10804-PD | 662 | CG10804-PD | 53..597 | 54..617 | 1470 | 46.8 | Plus |
| CG10804-PB | 662 | CG10804-PB | 53..597 | 54..617 | 1470 | 46.8 | Plus |
| CG10804-PC | 726 | CG10804-PC | 117..661 | 54..617 | 1470 | 46.8 | Plus |
