BS22583.complete Sequence
1724 bp assembled on 2011-02-15
GenBank Submission: KX800892
> BS22583.complete
GAAGTTATCAGTCGACATGTCGGAAAAGAATATTAAAACAGCGATTCCAG
AGAAAAGCAAAGGACTAGAAAATGACAAGGATGCTGATGGTAATTCAGAT
AGTACCGCGGAGGCAGAAGCCACGCCCACGGAAGAAGGTTCTGCCACCTT
CGACAAGGCGATCGAAGGAGCTGGCTTTGGAATTTTCAATCTGATGCTGC
TGATCGTCTCCATTCCCGCCCAGAGTGCCGCAATATTCGAGTCCAGCTCA
ATGTCCTACATCCTGCCAATTGCCGAGTGCGATCTTCGTCTGACTCTGGA
GGACAAAGGTGTGCTGAATGCGGTGGCCTACGCGGGCATGACCATCTCGG
CCATTGCCTGGGGCTATCTGGCAGATACGAAGGGTCGCAAAAAGATCCTC
TACTGGGGCTATCTGATCGATGCTGTGTGCGTTTTTGGCAGTGCCTTGAG
TCAAAACTTCAGTATGCTGGTGATGTTCAAGTTTCTGGGGGGCTTGGTGG
TGAATGGTCCGGCTGCTGTGCTCTTCACCTATCTGACTGAAATGCACGGA
CCCAAGCACCGATCCTCTGTTCTGATGATCGTGGGCATGGTCACCTCTAC
GGCGACGGTTTCGCTACCTCTTTTGGCCTGGGGAATTTTTCCCAGAGATT
GGGACTTTGAGTTCTGGGGCTTGCAAGTCCACAGTTGGCAAATTTTCCTG
TTCGTGCTGGGCATTCCAAGTTTGATCAGCGGTTTGATTTTCTGCAGCAT
GCCGGAAAGTCCGCGATTTTTAATGGCCCAAGGACGGAACGAGGAGGCGC
TCCAAGCCTTCAAGCAGATCTACCATGTCAACACTCGCAAGCCCAAGGAT
AGCTATCCCATAAAAGCTCTCATTCAGGAAGTGCCCAATCGTAAGGCCGC
CCAGAACGAGGTTATCTACACAATCGAGGAGAAATCCGGAGAGGTGCCAA
CCAAGCGACAGTCTCGTACCCTGGCTGAGAGCCTCCGAGCCGGGCTGCAG
CAGATGAAGCCGCTGGTCAGGAAGCCCCTGCTGGGTTTGGCCATTTGCTG
CTACGTGATGCAGTTCGGCATCTTCCTGGGCATGAACACCATCCGTCTGT
GGCTGCCGCAGCTCTTCGCCTCCATGGCGGAGTACGAGGCCCTGCACGCC
GGGGACGGATTGGATGTCAGCATGTGCACCATCCTCGAGTTCAGCGTCAA
TCAGACGGCTGAGACAGCTCTGAATTACGCCGACGCCTGTTCCGAGCCCA
AGGTAATTTCGATGGACATGTATCTGAATAACATTATTGTTTCGGCCACG
GGCTTTGTGGGCTACTTCTTTGCCGGTGGAATCTTGCGGGCTCTGGGTCC
AAAACGCATGATGACTTACGGATTGTTTCTGTCGGGAACCTTTGGCCTGA
TGCTCTACTTTTCCGTGAGCAGTCTAATGACACTCATTGTGTCTGCGACT
TTTCTTACGATTACGGGAATTGCTGTCTCTTCACTTTTGGGTGCTGTGGT
GGCCCTGTTTCCCACACAATTGAGAACCGTTGTTGTTGCCATTGCCATGA
TGTGTGGACGCTTTGGTGCTCTGTCCGGAAATTTACTCTTCCCCGTATTC
GTTCAAACCGGATGTTTGCCACCATTTATAATGGTGTCCTCAGTGCTGAT
ATTATCTGGCATCCTGTCAATATCTCTGCCTGATCCGGCAAAGGCAACGT
TTTCTTAGAAGCTTTCTAGACCAT
BS22583.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31272-RA | 1692 | CG31272-PA | 1..1692 | 17..1708 | 8445 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31272-RA | 2102 | CG31272-RA | 210..1903 | 17..1710 | 8455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10758379..10758817 | 499..61 | 2195 | 100 | Minus |
| 3R | 32079331 | 3R | 10757450..10757836 | 1246..860 | 1935 | 100 | Minus |
| 3R | 32079331 | 3R | 10757901..10758084 | 859..676 | 905 | 99.5 | Minus |
| 3R | 32079331 | 3R | 10758145..10758323 | 677..499 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 10756803..10756962 | 1524..1365 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 10756618..10756747 | 1652..1523 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 10757026..10757145 | 1364..1245 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 10756495..10756552 | 1710..1653 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 10759143..10759189 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:46:22 has no hits.
BS22583.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:34 Download gff for
BS22583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31272-RA | 203..1894 | 17..1708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:36 Download gff for
BS22583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31272-RA | 210..1901 | 17..1708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:30 Download gff for
BS22583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31272-RA | 210..1901 | 17..1708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:30 Download gff for
BS22583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10756497..10756552 | 1653..1708 | 100 | <- | Minus |
| 3R | 10756618..10756745 | 1525..1652 | 100 | <- | Minus |
| 3R | 10756803..10756962 | 1365..1524 | 100 | <- | Minus |
| 3R | 10757026..10757143 | 1247..1364 | 100 | <- | Minus |
| 3R | 10757450..10757836 | 860..1246 | 100 | <- | Minus |
| 3R | 10757901..10758082 | 678..859 | 99 | <- | Minus |
| 3R | 10758145..10758323 | 499..677 | 100 | <- | Minus |
| 3R | 10758380..10758815 | 63..498 | 100 | <- | Minus |
| 3R | 10759144..10759189 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:36 Download gff for
BS22583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6582219..6582274 | 1653..1708 | 100 | <- | Minus |
| arm_3R | 6582340..6582467 | 1525..1652 | 100 | <- | Minus |
| arm_3R | 6582525..6582684 | 1365..1524 | 100 | <- | Minus |
| arm_3R | 6582748..6582865 | 1247..1364 | 100 | <- | Minus |
| arm_3R | 6583172..6583558 | 860..1246 | 100 | <- | Minus |
| arm_3R | 6583623..6583804 | 678..859 | 99 | <- | Minus |
| arm_3R | 6583867..6584045 | 499..677 | 100 | <- | Minus |
| arm_3R | 6584102..6584537 | 63..498 | 100 | <- | Minus |
| arm_3R | 6584866..6584911 | 17..62 | 100 | | Minus |
BS22583.pep Sequence
Translation from 16 to 1707
> BS22583.pep
MSEKNIKTAIPEKSKGLENDKDADGNSDSTAEAEATPTEEGSATFDKAIE
GAGFGIFNLMLLIVSIPAQSAAIFESSSMSYILPIAECDLRLTLEDKGVL
NAVAYAGMTISAIAWGYLADTKGRKKILYWGYLIDAVCVFGSALSQNFSM
LVMFKFLGGLVVNGPAAVLFTYLTEMHGPKHRSSVLMIVGMVTSTATVSL
PLLAWGIFPRDWDFEFWGLQVHSWQIFLFVLGIPSLISGLIFCSMPESPR
FLMAQGRNEEALQAFKQIYHVNTRKPKDSYPIKALIQEVPNRKAAQNEVI
YTIEEKSGEVPTKRQSRTLAESLRAGLQQMKPLVRKPLLGLAICCYVMQF
GIFLGMNTIRLWLPQLFASMAEYEALHAGDGLDVSMCTILEFSVNQTAET
ALNYADACSEPKVISMDMYLNNIIVSATGFVGYFFAGGILRALGPKRMMT
YGLFLSGTFGLMLYFSVSSLMTLIVSATFLTITGIAVSSLLGAVVALFPT
QLRTVVVAIAMMCGRFGALSGNLLFPVFVQTGCLPPFIMVSSVLILSGIL
SISLPDPAKATFS*
BS22583.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31272-PA | 563 | CG31272-PA | 1..563 | 1..563 | 2858 | 100 | Plus |
| CG3690-PB | 558 | CG3690-PB | 3..555 | 18..560 | 1288 | 46.3 | Plus |
| CG3690-PA | 558 | CG3690-PA | 3..555 | 18..560 | 1288 | 46.3 | Plus |
| CG14691-PA | 522 | CG14691-PA | 13..513 | 43..554 | 944 | 38.3 | Plus |
| CG14691-PB | 510 | CG14691-PB | 13..501 | 43..554 | 897 | 37.4 | Plus |
