BS22590.complete Sequence
635 bp assembled on 2011-01-25
GenBank Submission: KX802379
> BS22590.complete
GAAGTTATCAGTCGACATGGAGATGAGTGCTGCCATGTTCGCACGCGTTT
CCTTCTACCCCACCCTGCTGTACAATGTCCTGATGGAAAAGGCATCGGCC
AGGAATTGGTACGATCGCATCGATGAGCATGTGATACTGGGAGCACTGCC
CTTTCGCAGCCAGGCCAATGACCTCATTGAAAAGGAGAACATGAAGGCGG
TGGTGTCGATGAACGAGGACTATGAGCTGACCGCCTTCTCCAACAACACG
GAGAAGTGGCGAAAGCTTGGCATTGAGTTCCTGCAGCTGGCCACCACCGA
CATCTTTGAGTCGCCCAATCAAGAAAAGCTCTTCCGCGGCGTGGAATTCA
TAAACAAGTTCCTGCCTCTAAAGCAAAGAATTGGTGGCCTAAGTTCCTCC
TACCAGCCGGAGAACGTGGGTTCTGTCTATGTGCACTGCAAGGCTGGTAG
GACGCGAAGTGCCACTTTGGTGGGATGCTACCTCATGATGAAGAACGGAT
GGACTCCGGATCAGGCGGTTGACCACATGCGTAAGTGCCGACCGCACATT
CTGCTGCACACCAAACAATGGGATGCCCTCCGGTTATTCTACACAAACAA
TGTGGAGACGAAATCATGAAAGCTTTCTAGACCAT
BS22590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plip-RB | 603 | CG10371-PB | 1..603 | 17..619 | 3015 | 100 | Plus |
| Plip-RA | 585 | CG10371-PA | 1..585 | 35..619 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plip-RB | 901 | CG10371-RB | 171..781 | 9..619 | 3025 | 99.7 | Plus |
| Plip-RA | 878 | CG10371-RA | 168..758 | 29..619 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23758978..23759295 | 173..490 | 1590 | 100 | Plus |
| 3R | 32079331 | 3R | 23758775..23758918 | 29..172 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 23759357..23759486 | 490..619 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:29:55 has no hits.
BS22590.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:28 Download gff for
BS22590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 177..778 | 17..618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:51 Download gff for
BS22590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 179..780 | 17..618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:19 Download gff for
BS22590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 179..780 | 17..618 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:19 Download gff for
BS22590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23758775..23758918 | 29..172 | 100 | -> | Plus |
| 3R | 23758978..23759295 | 173..490 | 100 | -> | Plus |
| 3R | 23759358..23759485 | 491..618 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:51 Download gff for
BS22590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19584497..19584640 | 29..172 | 100 | -> | Plus |
| arm_3R | 19584700..19585017 | 173..490 | 100 | -> | Plus |
| arm_3R | 19585080..19585207 | 491..618 | 100 | | Plus |
BS22590.pep Sequence
Translation from 16 to 618
> BS22590.pep
MEMSAAMFARVSFYPTLLYNVLMEKASARNWYDRIDEHVILGALPFRSQA
NDLIEKENMKAVVSMNEDYELTAFSNNTEKWRKLGIEFLQLATTDIFESP
NQEKLFRGVEFINKFLPLKQRIGGLSSSYQPENVGSVYVHCKAGRTRSAT
LVGCYLMMKNGWTPDQAVDHMRKCRPHILLHTKQWDALRLFYTNNVETKS
*
BS22590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plip-PB | 200 | CG10371-PB | 1..200 | 1..200 | 1054 | 100 | Plus |
| Plip-PA | 194 | CG10371-PA | 1..194 | 7..200 | 1027 | 100 | Plus |
