BS22592.complete Sequence
1328 bp assembled on 2011-01-25
GenBank Submission: KX805766
> BS22592.complete
GAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGC
TAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGAC
GATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTT
CCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTC
AGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGAT
CTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTC
CGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATG
GCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGAC
TCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAA
GGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGG
TCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAG
GGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCAC
CTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATG
ATCGCCGCGAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGAC
ATTGATGAGCCCAAGTCCACAACACCAACAAACACAAGTTATACAACAAA
TCTTCACACCAGCGCACCCATAGACTCCGAATTCGAAGCTTCCGATATCA
GTGAGGATATAGTGGAAACTCAACCGGAAGAGCAAAAGAACACCATGGAT
CAGCTGCAGCAAATGATGGAACCCCTGCGAGAGGAGATCAGACATGAGGA
AGATTTGGAGCAGGAACACGAGGACAAGGAGTACTTGGAGAGGAAAGAGA
AGAAGGAGCGTGAAGAATTCGATTCCTCAGACGATGAAGACGGCGAGGCT
ACAACTCCTGTTGTGATGAGCGAAACCTTCAATGATGAGTGGGCCGAATT
CGATCAGGATCAGGATCGAGAGCACGATCGGAATGAGGATCAGGATCATG
ATTTGGACTTTGAAAACGATCTAAACAACGAAATCGATATCGAGGAGAAC
TTTGTGCCCATTGACCTATCCAACGATATAGCCGTCAACGATTTGGCTGC
CGCAGATCCCAATTTTCCCATCAATGAAGATGCCGAGTTCATTGTGCACC
CAGCTGTAATCAGAACTATGCCTATGTTCGAGAAGCTTTCTTTAGGAGAG
CCTGCGAAATGAAAGCTTTCTAGACCAT
BS22592.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vir-1-RB | 1296 | CG31764-PB | 1..1296 | 17..1312 | 6480 | 100 | Plus |
| vir-1-RA | 1296 | CG31764-PA | 1..1296 | 17..1312 | 6480 | 100 | Plus |
| vir-1-RH | 705 | CG31764-PH | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vir-1-RB | 1849 | CG31764-RB | 243..1538 | 17..1312 | 6480 | 100 | Plus |
| vir-1-RA | 1765 | CG31764-RA | 159..1454 | 17..1312 | 6480 | 100 | Plus |
| vir-1-RH | 1121 | CG31764-RH | 232..930 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12403581..12404179 | 1312..714 | 2995 | 100 | Minus |
| 2L | 23513712 | 2L | 12407185..12407468 | 715..432 | 1420 | 100 | Minus |
| 2L | 23513712 | 2L | 12407548..12407735 | 435..248 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 12409456..12409626 | 248..78 | 855 | 100 | Minus |
| 2L | 23513712 | 2L | 12421641..12421704 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:31:54 has no hits.
BS22592.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:30 Download gff for
BS22592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RB | 225..1519 | 17..1311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:22 Download gff for
BS22592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RA | 159..1453 | 17..1311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:04 Download gff for
BS22592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RA | 159..1453 | 17..1311 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:04 Download gff for
BS22592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
| 2L | 12421641..12421704 | 17..80 | 100 | | Minus |
| 2L | 12403582..12404177 | 716..1311 | 100 | <- | Minus |
| 2L | 12407185..12407466 | 434..715 | 100 | <- | Minus |
| 2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:22 Download gff for
BS22592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12407185..12407466 | 434..715 | 100 | <- | Minus |
| arm_2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
| arm_2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
| arm_2L | 12421641..12421704 | 17..80 | 100 | | Minus |
| arm_2L | 12403582..12404177 | 716..1311 | 100 | <- | Minus |
BS22592.pep Sequence
Translation from 16 to 1311
> BS22592.pep
MKLLFGLLMTVLALSGVFTLPARNDPQDDAEVIKVPSRPQPESDFHNFRG
VIDTGSGYPFLQPNPSSFNVGIFDSFDDLFRRLRTRLWPVIGRDSGEEGA
SPTGDSDDSSDGSGAGFPFGVRPLIPLDSKNANTTSTIKVVNGHKVEINE
TVYGDSNSVFKVRLVNVRPLESGEEVAQGVHTSGGDFQPALEPSTSAPPK
KFEEFDEEDDDDRREPLEKQPQDNEVRDIDEPKSTTPTNTSYTTNLHTSA
PIDSEFEASDISEDIVETQPEEQKNTMDQLQQMMEPLREEIRHEEDLEQE
HEDKEYLERKEKKEREEFDSSDDEDGEATTPVVMSETFNDEWAEFDQDQD
REHDRNEDQDHDLDFENDLNNEIDIEENFVPIDLSNDIAVNDLAAADPNF
PINEDAEFIVHPAVIRTMPMFEKLSLGEPAK*
BS22592.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vir-1-PB | 431 | CG31764-PB | 1..431 | 1..431 | 2261 | 100 | Plus |
| vir-1-PA | 431 | CG31764-PA | 1..431 | 1..431 | 2261 | 100 | Plus |
| vir-1-PG | 423 | CG31764-PG | 1..423 | 1..431 | 2200 | 98.1 | Plus |
| vir-1-PH | 234 | CG31764-PH | 1..233 | 1..233 | 1222 | 100 | Plus |
| vir-1-PC | 234 | CG31764-PC | 1..233 | 1..233 | 1222 | 100 | Plus |
