BS22595.complete Sequence
1349 bp assembled on 2011-02-18
GenBank Submission: KX801608
> BS22595.complete
GAAGTTATCAGTCGACATGGTAATCTGTGAGATTGAGTTCTGCAATAATT
CCCAAGGAATTTTTTATGCAGGCCAGTTGATTTCAGGACAGGTGGTCATT
AAAACTGAGAAGGAAAAGTCAGTGAAAGCTGTAATCCTTAACATCAAGGG
ATATGCCGAAACCCACTGGGCGGATACCGAACACGATCCGGATGATCAGT
CGAATGGTGAATCATTCAACGGACATGTGGACTACTTGGCCACTAGGGCT
TATCTGCACGGGTCTAGTTCCAGCATAGAGGTGCTTATTGAGCCTGGCAC
CAGCTCGTATAGATTCGCCTGTCAGTTGCCCATCACATGTCCCTCTTCTT
TCGAGGGGACACTAGGTCGGATACGTTATCTGGTGAACGTGAGGTTCGTG
CGTCCGTGGAAGTTCGATCTGAACTTTAATCGATGCTTCACTGTGATCAA
AGTGATGGACCTGAACTCCGAAAGCCTAATGCTGAGGGTACCTAGTCAAG
TGGAGTCCCAGCGAACTTTCTGCTGTTTTCCCTGCCGCTCGTCGCCACTC
AGTATGCGACTTTCTGTTCCACAGAGTGGTTTTGTGCCAGGACAGATCGT
GCCGGTGGAGGTGATGGTCTCCAATGACAGTGGTGTAGCCGTGGAGGACA
TAACCGTAAAACTGACTATGGTGGTGATTTACTACAGTCAACCCCCGTCC
GCGGACACCAACAAGGACCGTTTTGAGATGGTCCTGAAAACAGGCGGAGG
TGTGTCGACCAAATGCCGGCAGCAGTTTACCTTCGATCTTAAGGTGCCGC
CAACTCCGCCAACCTGCTTTAATCTATGCAGCATCATTCAGATCGGCTAT
CAGGTGGAAGCGGAGGCCAGAGTTAAAGGTTGTCATGGCGGCCAGTCCCT
TCACATGCCCATAACTATTGGAAGTGTCCCGCTAACGAAGCAACTCCAAA
AAGAACCAAGGACTTGGGGTGAAGTTCTGCCACCCCAGCAGCTAGATGCG
AAGGCTTTGATTTTAATTGGCAGCGAACAGAATGGAGAAGCACTCGGAAG
CCCCAATCCTTGGGCTGCGGATCCTTCAATTGCACCGCCGAGTTATGCTG
AGGCTAAACACATCTCCCCGGATCCGCACAAGTTCTCGAAATCGAAGAAA
AAGTCTCAGAAAAGAGGTGTAAAAGGATCACAAGAGAGGAAAGCTGAAAC
AATTGTGTTTTCACCCTTATACGCAGTCTTTGATTTGTCAAACCAAGTGG
ACGAAATGACTTTGAGAGCAAATGAACCCAAGACTGATGGCGGCTATGTC
AATGAAGGTGTAGAAAAAAGCACTTGGCTTTAGAAGCTTTCTAGACCAT
BS22595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18746-RA | 1317 | CG18746-PA | 1..1317 | 17..1333 | 6570 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18746-RA | 1487 | CG18746-RA | 81..1400 | 17..1336 | 6585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7788714..7789309 | 1082..487 | 2965 | 99.8 | Minus |
| 3R | 32079331 | 3R | 7788369..7788623 | 1336..1082 | 1275 | 100 | Minus |
| 3R | 32079331 | 3R | 7789456..7789669 | 490..277 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 7789731..7789882 | 278..127 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 7789996..7790107 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:44:17 has no hits.
BS22595.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:38:02 Download gff for
BS22595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18746-RA | 76..1392 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:09 Download gff for
BS22595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18746-RA | 81..1397 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:03 Download gff for
BS22595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18746-RA | 81..1397 | 17..1333 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:03 Download gff for
BS22595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7789996..7790107 | 17..128 | 100 | | Minus |
| 3R | 7789459..7789667 | 279..487 | 100 | <- | Minus |
| 3R | 7789731..7789880 | 129..278 | 100 | <- | Minus |
| 3R | 7788372..7788622 | 1083..1333 | 100 | <- | Minus |
| 3R | 7788714..7789308 | 488..1082 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:09 Download gff for
BS22595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3614094..3614344 | 1083..1333 | 100 | <- | Minus |
| arm_3R | 3614436..3615030 | 488..1082 | 99 | <- | Minus |
| arm_3R | 3615181..3615389 | 279..487 | 100 | <- | Minus |
| arm_3R | 3615453..3615602 | 129..278 | 100 | <- | Minus |
| arm_3R | 3615718..3615829 | 17..128 | 100 | | Minus |
BS22595.pep Sequence
Translation from 16 to 1332
> BS22595.pep
MVICEIEFCNNSQGIFYAGQLISGQVVIKTEKEKSVKAVILNIKGYAETH
WADTEHDPDDQSNGESFNGHVDYLATRAYLHGSSSSIEVLIEPGTSSYRF
ACQLPITCPSSFEGTLGRIRYLVNVRFVRPWKFDLNFNRCFTVIKVMDLN
SESLMLRVPSQVESQRTFCCFPCRSSPLSMRLSVPQSGFVPGQIVPVEVM
VSNDSGVAVEDITVKLTMVVIYYSQPPSADTNKDRFEMVLKTGGGVSTKC
RQQFTFDLKVPPTPPTCFNLCSIIQIGYQVEAEARVKGCHGGQSLHMPIT
IGSVPLTKQLQKEPRTWGEVLPPQQLDAKALILIGSEQNGEALGSPNPWA
ADPSIAPPSYAEAKHISPDPHKFSKSKKKSQKRGVKGSQERKAETIVFSP
LYAVFDLSNQVDEMTLRANEPKTDGGYVNEGVEKSTWL*
BS22595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18746-PA | 438 | CG18746-PA | 1..438 | 1..438 | 2305 | 100 | Plus |
| CG18745-PA | 433 | CG18745-PA | 3..433 | 2..438 | 940 | 42.4 | Plus |
| CG18748-PC | 409 | CG18748-PC | 3..401 | 2..418 | 930 | 43.8 | Plus |
| CG18748-PB | 359 | CG18748-PB | 3..351 | 2..418 | 742 | 38.3 | Plus |
| CG18747-PB | 418 | CG18747-PB | 2..418 | 1..434 | 707 | 36.6 | Plus |
