BS22602.complete Sequence
1655 bp assembled on 2011-01-25
GenBank Submission: KX801024
> BS22602.complete
GAAGTTATCAGTCGACATGGATTCACAAAGGTCCACGTTGGTCCACTGGT
TCCGTAAAGGACTCCGGTTGCACGACAATCCGGCATTATCGCACATTTTT
ACCGCCGCTAACGCTGCTCCAGGAAAATACTTTGTTCGCCCGATTTTCAT
TTTGGATCCAGGAATCCTCGATTGGATGCAAGTGGGTGCCAATCGATGGC
GATTCCTGCAGCAAACGCTGGAGGACTTGGATAACCAGCTTCGGAAACTT
AATTCCCGTCTGTTTGTGGTGCGCGGGAAGCCCGCAGAGGTTTTTCCCCG
TATTTTTAAGAGTTGGCGCGTGGAAATGCTAACTTTTGAGACAGATATCG
AGCCGTACTCCGTGACCCGGGATGCTGCCGTGCAGAAGTTGGCCAAGGCA
GAGGGTGTGAGAGTGGAAACTCATTGCTCCCACACGATTTATAATCCGGA
ATTAGTAATAGCGAAGAATCTTGGCAAGGCTCCAATTACCTATCAAAAGT
TCCTGGGCATTGTGGAGCAACTAAAGGTACCTAAAGTTCTAGGGGTTCCT
GAAAAGCTTAAAAACATGCCTACACCACCCAAAGATGAGGTGGAGCAAAA
GGATTCGGCGGCCTATGATTGTCCTACGATGAAGCAATTAGTAAAACGCC
CGGAGGAACTGGGCCCTAATAAGTTTCCGGGAGGCGAAACAGAGGCACTG
CGCCGCATGGAGGAATCCCTAAAGGATGAAATTTGGGTTGCCCGCTTTGA
GAAGCCCAACACGGCACCCAACTCGCTGGAGCCTAGCACTACCGTACTAA
GCCCTTACCTCAAATTTGGATGCCTTAGTGCCCGACTGTTCAATCAAAAG
CTCAAGGAAATTATCAAACGCCAGCCGAAGCACTCGCAGCCGCCCGTTTC
GCTCATTGGACAACTCATGTGGAGGGAATTTTACTACACAGTGGCGGCTG
CGGAACCCAATTTCGATCGAATGTTGGGCAATGTATACTGCATGCAAATT
CCGTGGCAGGAGCATCCAGATCACTTGGAGGCCTGGACACACGGACGCAC
AGGATATCCTTTCATCGACGCCATCATGCGTCAGCTGCGCCAGGAGGGTT
GGATCCATCATCTGGCCCGGCATGCAGTGGCATGTTTCTTAACGCGCGGA
GACCTCTGGATCAGTTGGGAGGAGGGACAGCGGGTGTTCGAGCAGCTGCT
GCTGGATCAGGACTGGGCACTAAACGCTGGCAACTGGATGTGGCTATCTG
CGTCCGCTTTCTTTCACCAGTATTTTCGCGTCTACAGTCCGGTGGCGTTT
GGCAAGAAAACGGATCCCCAAGGGCACTATATCAGGAAGTATGTGCCGGA
ACTCTCAAAATATCCTGCTGGCTGTATTTATGAGCCCTGGAAGGCGTCGC
TGGTGGATCAGCGGGCATACGGCTGCGTCCTCGGCACGGATTATCCCCAC
CGGATTGTTAAACACGAAGTGGTGCACAAGGAGAACATTAAGAGAATGGG
CGCCGCCTACAAAGTAAATCGGGAGGTGCGCACTGGCAAGGAGGAGGAGT
CGTCTTTCGAGGAGAAATCAGAAACCTCCACGTCTGGCAAGCGGAAGGTG
CGAAGGGCAACCGGAAGTGCCCCTAAGCGAAAACGTTAAAAGCTTTCTAG
ACCAT
BS22602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phr6-4-RD | 1623 | CG2488-PD | 1..1623 | 17..1639 | 8115 | 100 | Plus |
| phr6-4-RC | 1623 | CG2488-PC | 1..1623 | 17..1639 | 8115 | 100 | Plus |
| phr6-4-RB | 1623 | CG2488-PB | 1..1623 | 17..1639 | 8115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phr6-4-RD | 1989 | CG2488-RD | 73..1697 | 17..1641 | 8125 | 100 | Plus |
| phr6-4-RC | 2044 | CG2488-RC | 128..1752 | 17..1641 | 8125 | 100 | Plus |
| phr6-4-RB | 2161 | CG2488-RB | 245..1869 | 17..1641 | 8125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20643643..20644602 | 1641..682 | 4800 | 100 | Minus |
| 2L | 23513712 | 2L | 20644663..20645330 | 684..17 | 3340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:25:13 has no hits.
BS22602.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:14:56 Download gff for
BS22602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr6-4-RB | 243..1863 | 17..1637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:13 Download gff for
BS22602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr6-4-RB | 245..1865 | 17..1637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:55 Download gff for
BS22602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr6-4-RB | 245..1865 | 17..1637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:55 Download gff for
BS22602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20643647..20644600 | 684..1637 | 100 | <- | Minus |
| 2L | 20644664..20645330 | 17..683 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:13 Download gff for
BS22602.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20643647..20644600 | 684..1637 | 100 | <- | Minus |
| arm_2L | 20644664..20645330 | 17..683 | 100 | | Minus |
BS22602.pep Sequence
Translation from 16 to 1638
> BS22602.pep
MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGI
LDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSW
RVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAK
NLGKAPITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAY
DCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTA
PNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQL
MWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFI
DAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDW
ALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYP
AGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYKV
NREVRTGKEEESSFEEKSETSTSGKRKVRRATGSAPKRKR*
BS22602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phr6-4-PD | 540 | CG2488-PD | 1..540 | 1..540 | 2901 | 100 | Plus |
| phr6-4-PC | 540 | CG2488-PC | 1..540 | 1..540 | 2901 | 100 | Plus |
| phr6-4-PB | 540 | CG2488-PB | 1..540 | 1..540 | 2901 | 100 | Plus |
| phr6-4-PA | 540 | CG2488-PA | 1..540 | 1..540 | 2901 | 100 | Plus |
| cry-PA | 542 | CG3772-PA | 4..509 | 5..494 | 850 | 37.9 | Plus |
